RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 BANF1O75531 89 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 PSMD10O75832 226 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 SSTR1P30872 391 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 RPA3P35244 121 aaPredicted RBP13.3□□□□□ -0.28
LIG1-221ENST00000613670 SPIRE1Q08AE8 756 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 KCNT1Q5JUK3 1230 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 SEMA4DQ92854 862 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 DNPEPQ9ULA0 475 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 SLC12A4Q9UP95 1085 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 DKC1O60832 514 aaKnown RBP eCLIP13.3□□□□□ -0.281e-6■■□□□ 12.5
LIG1-221ENST00000613670 TMEM191BP0C7N4 346 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 NPR1P16066 1061 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 EPHB1P54762 984 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 BNIP1Q12981 228 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 KRT81Q14533 505 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 SLC30A9Q6PML9 568 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 MCOLN2Q8IZK6 566 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 RBBP8NLQ8NC74 664 aaPredicted RBP13.3□□□□□ -0.28
LIG1-221ENST00000613670 CRAMP1Q96RY5 1269 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 TBC1D10AQ9BXI6 508 aa13.3□□□□□ -0.28
LIG1-221ENST00000613670 RBAKQ9NYW8 714 aaPredicted RBP13.3□□□□□ -0.28
LIG1-221ENST00000613670 CAPN9O14815 690 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 UBTFL6P0CB48 400 aaPredicted RBP13.29□□□□□ -0.28
LIG1-221ENST00000613670 GYS1P13807 737 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 CLEC16AQ2KHT3 1053 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 SDCCAG8Q86SQ7 713 aaPredicted RBP13.29□□□□□ -0.28
LIG1-221ENST00000613670 FAM160B2Q86V87 743 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 CCDC124Q96CT7 223 aaKnown RBP13.29□□□□□ -0.28
LIG1-221ENST00000613670 LRRC19Q9H756 370 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 IP6K2Q9UHH9 426 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 PKD1L3Q7Z443 1732 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 TIAM2Q8IVF5 1701 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 CCDC22O60826 627 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 ADRA1DP25100 572 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 NPTX2P47972 431 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 CENPCQ03188 943 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 FAM71AQ8IYT1 594 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 TTC8Q8TAM2 541 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 TEKT4Q8WW24 435 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 P2RX7Q99572 595 aaKnown RBP13.29□□□□□ -0.28
LIG1-221ENST00000613670 RIT2Q99578 217 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 TBC1D22BQ9NU19 505 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 PARVAQ9NVD7 372 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 SENP1Q9P0U3 644 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 SAE1Q9UBE0 346 aaPredicted RBP13.29□□□□□ -0.28
LIG1-221ENST00000613670 AGO2Q9UKV8 859 aaKnown RBP13.29□□□□□ -0.28
LIG1-221ENST00000613670 G3BP2Q9UN86 482 aaKnown RBP13.29□□□□□ -0.28
LIG1-221ENST00000613670 IQANK1A0A1B0GTG1 560 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 NFIBO00712 420 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 PROSCO94903 275 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 POLR2BP30876 1174 aaKnown RBP13.29□□□□□ -0.28
LIG1-221ENST00000613670 CIITAP33076 1130 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 POU5F1Q01860 360 aaKnown RBP13.29□□□□□ -0.28
LIG1-221ENST00000613670 CYP4A22Q5TCH4 519 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 C1orf146Q5VVC0 180 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 VSTM1Q6UX27 236 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 TMEM35BQ8NCS4 154 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 PARD3BQ8TEW8 1205 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 TMEM143Q96AN5 459 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 LENG9Q96B70 501 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 PRMT6Q96LA8 375 aaPredicted RBP13.29□□□□□ -0.28
LIG1-221ENST00000613670 FAM111AQ96PZ2 611 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 C12orf65Q9H3J6 166 aaKnown RBP13.29□□□□□ -0.28
LIG1-221ENST00000613670 SLC9A2Q9UBY0 812 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 HEY1Q9Y5J3 304 aa13.29□□□□□ -0.28
LIG1-221ENST00000613670 ZNF142P52746 1687 aaPredicted RBP13.28□□□□□ -0.28
LIG1-221ENST00000613670 PIK3R2O00459 728 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 ZWINTO95229 277 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 PRKG1Q13976 671 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 ZNF268Q14587 947 aaPredicted RBP13.28□□□□□ -0.28
LIG1-221ENST00000613670 SLC7A3Q8WY07 619 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 SENP7Q9BQF6 1050 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 FHDC1Q9C0D6 1143 aaPredicted RBP13.28□□□□□ -0.28
LIG1-221ENST00000613670 RNPEPL1Q9HAU8 725 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 B2RBV5 119 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 PPP1R12AO14974 1030 aaPredicted RBP13.28□□□□□ -0.28
LIG1-221ENST00000613670 CST8O60676 142 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 MAP3K6O95382 1288 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 LMNAP02545 664 aaKnown RBP13.28□□□□□ -0.28
LIG1-221ENST00000613670 TAC1P20366 129 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 CALB2P22676 271 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 YY1P25490 414 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 PEX5P50542 639 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 CCNHP51946 323 aaPredicted RBP13.28□□□□□ -0.28
LIG1-221ENST00000613670 THOC5Q13769 683 aaKnown RBP13.28□□□□□ -0.28
LIG1-221ENST00000613670 PTK6Q13882 451 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 CCNG2Q16589 344 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 THNSL1Q8IYQ7 743 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 MAGEC3Q8TD91 643 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 FAF2Q96CS3 445 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 GMCL1Q96IK5 515 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 POLR3FQ9H1D9 316 aaPredicted RBP13.28□□□□□ -0.28
LIG1-221ENST00000613670 H3BRJ5 948 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 FSCN2O14926 492 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 KCNA3P22001 575 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 PSMC4P43686 418 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 SATB1Q01826 763 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 PPP2R5CQ13362 524 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 TFDP1Q14186 410 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 MFSD7Q6UXD7 560 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms