RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 TDRD5Q8NAT2 981 aaKnown RBP12.52□□□□□ -0.41
LINC00539-204ENST00000608957 GLIS3Q8NEA6 775 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 SMG7Q92540 1137 aaKnown RBP12.52□□□□□ -0.41
LINC00539-204ENST00000608957 KIF12Q96FN5 646 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 ASIC4Q96FT7 647 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 RHOBTB2Q9BYZ6 727 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 GTPBP4Q9BZE4 634 aaKnown RBP12.52□□□□□ -0.41
LINC00539-204ENST00000608957 PLEKHA4Q9H4M7 779 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 PLEKHA5Q9HAU0 1116 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 CPSF3Q9UKF6 684 aaKnown RBP12.52□□□□□ -0.41
LINC00539-204ENST00000608957 STYXL1Q9Y6J8 313 aa12.52□□□□□ -0.41
LINC00539-204ENST00000608957 TMEM221A6NGB7 291 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 BECN2A8MW95 431 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 GOLGA6L19H0YKK7 550 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 M0R296 226 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 IDEP14735 1019 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 LRPAP1P30533 357 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 RPL9P32969 192 aaKnown RBP12.51□□□□□ -0.41
LINC00539-204ENST00000608957 DEKP35659 375 aaKnown RBP12.51□□□□□ -0.41
LINC00539-204ENST00000608957 ACOT2P49753 483 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 WNT7BP56706 349 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 RAB33AQ14088 237 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 MRPL58Q14197 206 aaKnown RBP12.51□□□□□ -0.41
LINC00539-204ENST00000608957 VARS2Q5ST30 1063 aaKnown RBP12.51□□□□□ -0.41
LINC00539-204ENST00000608957 JADE1Q6IE81 842 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 CRELD2Q6UXH1 353 aaPredicted RBP12.51□□□□□ -0.41
LINC00539-204ENST00000608957 TRIM67Q6ZTA4 783 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 CCDC149Q6ZUS6 474 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 CCDC65Q8IXS2 484 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 SMYD4Q8IYR2 804 aaPredicted RBP12.51□□□□□ -0.41
LINC00539-204ENST00000608957 HPS3Q969F9 1004 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 SUSD3Q96L08 255 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 MYADMQ96S97 322 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 MSTO1Q9BUK6 570 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 PRKD2Q9BZL6 878 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 WDR6Q9NNW5 1121 aaKnown RBP12.51□□□□□ -0.41
LINC00539-204ENST00000608957 ZDHHC7Q9NXF8 308 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 SEL1LQ9UBV2 794 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 LIMD1Q9UGP4 676 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 USTQ9Y2C2 406 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 BACE2Q9Y5Z0 518 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 CDY1Q9Y6F8 540 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 CLUHO75153 1309 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 ZDBF2Q9HCK1 2354 aa12.51□□□□□ -0.41
LINC00539-204ENST00000608957 IKBKBO14920 756 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 C8AP07357 584 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 NFICP08651 508 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 CD44P16070 742 aaKnown RBP12.5□□□□□ -0.41
LINC00539-204ENST00000608957 GAP43P17677 238 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 SCP2P22307 547 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 ERCC5P28715 1186 aaPredicted RBP12.5□□□□□ -0.41
LINC00539-204ENST00000608957 NTHL1P78549 312 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 MYL5Q02045 173 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 PPP2R3AQ06190 1150 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 EHHADHQ08426 723 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 ANKS3Q6ZW76 656 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 HVCN1Q96D96 273 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 MRPL44Q9H9J2 332 aaKnown RBP12.5□□□□□ -0.41
LINC00539-204ENST00000608957 RPF1Q9H9Y2 349 aaKnown RBP12.5□□□□□ -0.41
LINC00539-204ENST00000608957 OLFML3Q9NRN5 406 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 PANK4Q9NVE7 773 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 CTNND2Q9UQB3 1225 aa12.5□□□□□ -0.41
LINC00539-204ENST00000608957 DENND4CQ5VZ89 1909 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 WDR27A2RRH5 827 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 SMTNL1A8MU46 457 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 PPP1R3GB7ZBB8 358 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 SYN3O14994 580 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 CCL16O15467 120 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 TRAPPC3O43617 180 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 GCNT3O95395 438 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 PDGFBP01127 241 aaPredicted RBP12.49□□□□□ -0.41
LINC00539-204ENST00000608957 CYP3A5P20815 502 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 PPP1R2P41236 205 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 AARSP49588 968 aaKnown RBP eCLIP12.49□□□□□ -0.41
LINC00539-204ENST00000608957 TPM4P67936 248 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 ROR1Q01973 937 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 SIGLEC14Q08ET2 396 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 PSMD2Q13200 908 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 STIM1Q13586 685 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 KYAT1Q16773 422 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 COBLL1Q53SF7 1204 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 SPATA1Q5VX52 437 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 SCARA3Q6AZY7 606 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 SLC8B1Q6J4K2 584 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 KLHL10Q6JEL2 608 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 PDXDC1Q6P996 788 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 CYP26C1Q6V0L0 522 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 EFCAB13Q8IY85 973 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 KIAA0895Q8NCT3 520 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 SLC7A14Q8TBB6 771 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 FAM212AQ96EL1 285 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 HCFC1R1Q9NWW0 138 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 DPP7Q9UHL4 492 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 FBXL5Q9UKA1 691 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 AGO2Q9UKV8 859 aaKnown RBP12.49□□□□□ -0.41
LINC00539-204ENST00000608957 UBQLN1Q9UMX0 589 aaKnown RBP12.49□□□□□ -0.41
LINC00539-204ENST00000608957 SORCS3Q9UPU3 1222 aa12.49□□□□□ -0.41
LINC00539-204ENST00000608957 M0QZQ0 153 aa12.48□□□□□ -0.41
LINC00539-204ENST00000608957 NRG2O14511 850 aaPredicted RBP12.48□□□□□ -0.41
LINC00539-204ENST00000608957 SPTLC1O15269 473 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms