RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 XKR4Q5GH76 650 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 FAM78AQ5JUQ0 283 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 PRSS36Q5K4E3 855 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 PRR23BQ6ZRT6 265 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 CEP68Q76N32 757 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 USP37Q86T82 979 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 ITIH5Q86UX2 942 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 PLPP6Q8IY26 295 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 PDCD7Q8N8D1 485 aaKnown RBP6.88□□□□□ -1.31
CUX1-220ENST00000607092 CCDC26Q8TAB7 109 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 ZSCAN18Q8TBC5 510 aaPredicted RBP6.88□□□□□ -1.31
CUX1-220ENST00000607092 OXER1Q8TDS5 423 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 TNFRSF25Q93038 417 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 SUSD3Q96L08 255 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 GCNAQ96QF7 691 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 TMEM134Q9H6X4 195 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 GPRC5CQ9NQ84 441 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 SEMA4GQ9NTN9 838 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 HCFC1R1Q9NWW0 138 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 THG1LQ9NWX6 298 aaKnown RBP6.88□□□□□ -1.31
CUX1-220ENST00000607092 HSFX1Q9UBD0 423 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 NOL7Q9UMY1 257 aaKnown RBP6.88□□□□□ -1.31
CUX1-220ENST00000607092 DNM3Q9UQ16 869 aa6.88□□□□□ -1.31
CUX1-220ENST00000607092 PATJQ8NI35 1801 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.87□□□□□ -1.31
CUX1-220ENST00000607092 SOBPA7XYQ1 873 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 BTBD18B2RXH4 712 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 LAD1O00515 517 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 ADAM12O43184 909 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 TOM1L1O75674 476 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 CYP3A5P20815 502 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 FCARP24071 287 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 WEE1P30291 646 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 MCM4P33991 863 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 MCM7P33993 719 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 CCT6AP40227 531 aaKnown RBP6.87□□□□□ -1.31
CUX1-220ENST00000607092 LIMK1P53667 647 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 ARPP19P56211 112 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 YWHAHQ04917 246 aaPredicted RBP6.87□□□□□ -1.31
CUX1-220ENST00000607092 FCHO2Q0JRZ9 810 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 SPEM2Q0P670 501 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 SMARCB1Q12824 385 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 FZD5Q13467 585 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 VEPH1Q14D04 833 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 SLC5A9Q2M3M2 681 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 PPM1JQ5JR12 505 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 GLRA4Q5JXX5 417 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 ARMCX5Q6P1M9 558 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 MPZL3Q6UWV2 235 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 ALKAL1Q6UXT8 129 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 ZPBP2Q6X784 338 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 PRR23CQ6ZRP0 262 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 C11orf74Q86VG3 221 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 C12orf50Q8NA57 414 aaPredicted RBP6.87□□□□□ -1.31
CUX1-220ENST00000607092 GTF3C6Q969F1 213 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 ACO2Q99798 780 aaKnown RBP6.87□□□□□ -1.31
CUX1-220ENST00000607092 FOXP1Q9H334 677 aaPredicted RBP6.87□□□□□ -1.31
CUX1-220ENST00000607092 KDM4CQ9H3R0 1056 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 PLEKHA5Q9HAU0 1116 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 KMT5AQ9NQR1 393 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 KCND2Q9NZV8 630 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 CNTN3Q9P232 1028 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 LRWD1Q9UFC0 647 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 FBXL5Q9UKA1 691 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 ANGPTL2Q9UKU9 493 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 PCDHGA5Q9Y5G8 931 aa6.87□□□□□ -1.31
CUX1-220ENST00000607092 DCDC2BA2VCK2 349 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 C2orf72A6NCS6 295 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 CCDC169A6NNP5 214 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 HEPACAM2A8MVW5 462 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 CLDN3O15551 220 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 MED24O75448 989 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 OAZ2O95190 189 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 CLTAP09496 248 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 CHRNB1P11230 501 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 MYL4P12829 197 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 TDGF1P13385 188 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 TGM1P22735 817 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 CDC25CP30307 473 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 BRCC3P46736 316 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 TUFMP49411 452 aaKnown RBP6.86□□□□□ -1.31
CUX1-220ENST00000607092 PEX3P56589 373 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 TWF1Q12792 350 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 GPR17Q13304 367 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 MYBPC2Q14324 1141 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 GRM2Q14416 872 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 TAF12Q16514 161 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 AASDHQ4L235 1098 aaPredicted RBP6.86□□□□□ -1.31
CUX1-220ENST00000607092 EARS2Q5JPH6 523 aaKnown RBP6.86□□□□□ -1.31
CUX1-220ENST00000607092 KRT79Q5XKE5 535 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 EEF1DP3Q658K8 133 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 TSSK4Q6SA08 328 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 VITQ6UXI7 678 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 CACNA2D4Q7Z3S7 1137 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 WDR5BQ86VZ2 330 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 CD302Q8IX05 232 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 ZNF687Q8N1G0 1237 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 CAMKK1Q8N5S9 505 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 SPIRE2Q8WWL2 714 aa6.86□□□□□ -1.31
CUX1-220ENST00000607092 CDT1Q9H211 546 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms