RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 CCDC192P0DO97 292 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 BIRC3Q13489 604 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 TPD52L1Q16890 204 aaPredicted RBP20.84■□□□□ 0.93
UPF1-209ENST00000600310 SV2CQ496J9 727 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 RTP2Q5QGT7 225 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 DSTYKQ6XUX3 929 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 CEP57Q86XR8 500 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 AUTS2Q8WXX7 1259 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 PIK3R5Q8WYR1 880 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 B3GALT6Q96L58 329 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 PCDHB8Q9UN66 801 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 CHD9Q3L8U1 2897 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 HIDE1A8MVS5 230 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 KPNA7A9QM74 516 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 STX10O60499 249 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 TKTP29401 623 aaKnown RBP20.83■□□□□ 0.93
UPF1-209ENST00000600310 GCLMP48507 274 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 TRPC3Q13507 836 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 TCEAL5Q5H9L2 206 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 IRF2BP1Q8IU81 584 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 RIN2Q8WYP3 895 aaPredicted RBP20.83■□□□□ 0.93
UPF1-209ENST00000600310 PPP2R3CQ969Q6 453 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 SLC35C1Q96A29 364 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 HPDLQ96IR7 371 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 SENP8Q96LD8 212 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 DNAJC25Q9H1X3 360 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 THAP9Q9H5L6 903 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 TMEM8AQ9HCN3 771 aa20.83■□□□□ 0.93
UPF1-209ENST00000600310 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.82■□□□□ 0.92
UPF1-209ENST00000600310 C2CD2LO14523 706 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 VNN1O95497 513 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 STAU1O95793 577 aaKnown RBP20.82■□□□□ 0.92
UPF1-209ENST00000600310 ATICP31939 592 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 MYO1EQ12965 1108 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 NCOA4Q13772 614 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 ZSCAN23Q3MJ62 389 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 DCAF17Q5H9S7 520 aaPredicted RBP20.82■□□□□ 0.92
UPF1-209ENST00000600310 TCERG1LQ5VWI1 586 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 PDXDC1Q6P996 788 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 ADGRD2Q7Z7M1 963 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 TRIM59Q8IWR1 403 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 APPL2Q8NEU8 664 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 LNX1Q8TBB1 728 aaPredicted RBP20.82■□□□□ 0.92
UPF1-209ENST00000600310 RXFP1Q9HBX9 757 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.82■□□□□ 0.92
UPF1-209ENST00000600310 GDAP2Q9NXN4 497 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 UNC80Q8N2C7 3258 aa20.82■□□□□ 0.92
UPF1-209ENST00000600310 ARHGEF37A1IGU5 675 aa20.81■□□□□ 0.92
UPF1-209ENST00000600310 CYB561D2O14569 222 aa20.81■□□□□ 0.92
UPF1-209ENST00000600310 TYMPP19971 482 aa20.81■□□□□ 0.92
UPF1-209ENST00000600310 MYL6P60660 151 aa20.81■□□□□ 0.92
UPF1-209ENST00000600310 MRPL58Q14197 206 aaKnown RBP20.81■□□□□ 0.92
UPF1-209ENST00000600310 VARS2Q5ST30 1063 aaKnown RBP20.81■□□□□ 0.92
UPF1-209ENST00000600310 KRT39Q6A163 491 aa20.81■□□□□ 0.92
UPF1-209ENST00000600310 PRSS55Q6UWB4 352 aaPredicted RBP20.81■□□□□ 0.92
UPF1-209ENST00000600310 ANKS3Q6ZW76 656 aa20.81■□□□□ 0.92
UPF1-209ENST00000600310 CNOT6LQ96LI5 555 aaKnown RBP20.81■□□□□ 0.92
UPF1-209ENST00000600310 NAT10Q9H0A0 1025 aaKnown RBP20.81■□□□□ 0.92
UPF1-209ENST00000600310 XYLT2Q9H1B5 865 aa20.81■□□□□ 0.92
UPF1-209ENST00000600310 TLE6Q9H808 572 aa20.81■□□□□ 0.92
UPF1-209ENST00000600310 MMRN2Q9H8L6 949 aa20.81■□□□□ 0.92
UPF1-209ENST00000600310 VRTNQ9H8Y1 702 aa20.81■□□□□ 0.92
UPF1-209ENST00000600310 NFE2L3Q9Y4A8 694 aa20.81■□□□□ 0.92
UPF1-209ENST00000600310 CHD7Q9P2D1 2997 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 CYP11A1P05108 521 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 CNPP09543 421 aaKnown RBP20.8■□□□□ 0.92
UPF1-209ENST00000600310 ODC1P11926 461 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 CA8P35219 290 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 MXI1P50539 228 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 CREMQ03060 361 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 DUSP6Q16828 381 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 ANO6Q4KMQ2 910 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 FAM114A1Q8IWE2 563 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 MICALL1Q8N3F8 863 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 KLHL5Q96PQ7 755 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 CDCA3Q99618 268 aaPredicted RBP20.8■□□□□ 0.92
UPF1-209ENST00000600310 EMILIN2Q9BXX0 1053 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 FNIP2Q9P278 1114 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 MTRRQ9UBK8 725 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 DSEQ9UL01 958 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 BACE2Q9Y5Z0 518 aa20.8■□□□□ 0.92
UPF1-209ENST00000600310 PRRC2BQ5JSZ5 2229 aaKnown RBP20.8■□□□□ 0.92
UPF1-209ENST00000600310 H7C4K7 107 aa20.79■□□□□ 0.92
UPF1-209ENST00000600310 OAZ2O95190 189 aa20.79■□□□□ 0.92
UPF1-209ENST00000600310 HLA-DRAP01903 254 aa20.79■□□□□ 0.92
UPF1-209ENST00000600310 MYL5Q02045 173 aa20.79■□□□□ 0.92
UPF1-209ENST00000600310 YWHAHQ04917 246 aaPredicted RBP20.79■□□□□ 0.92
UPF1-209ENST00000600310 HYAL1Q12794 435 aa20.79■□□□□ 0.92
UPF1-209ENST00000600310 PSMD5Q16401 504 aa20.79■□□□□ 0.92
UPF1-209ENST00000600310 SGSM1Q2NKQ1 1148 aa20.79■□□□□ 0.92
UPF1-209ENST00000600310 CBWD6Q4V339 395 aa20.79■□□□□ 0.92
UPF1-209ENST00000600310 CBWD3Q5JTY5 395 aa20.79■□□□□ 0.92
UPF1-209ENST00000600310 CBWD5Q5RIA9 395 aa20.79■□□□□ 0.92
UPF1-209ENST00000600310 RBM23Q86U06 439 aaKnown RBP20.79■□□□□ 0.92
UPF1-209ENST00000600310 TAS1R2Q8TE23 839 aa20.79■□□□□ 0.92
UPF1-209ENST00000600310 BPIFA3Q9BQP9 254 aa20.79■□□□□ 0.92
UPF1-209ENST00000600310 SAMSN1Q9NSI8 373 aaKnown RBP20.79■□□□□ 0.92
UPF1-209ENST00000600310 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.79■□□□□ 0.92
UPF1-209ENST00000600310 TIMM13Q9Y5L4 95 aaPredicted RBP20.79■□□□□ 0.92
UPF1-209ENST00000600310 SNX9Q9Y5X1 595 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms