RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 SGSM1Q2NKQ1 1148 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 C1orf127Q8N9H9 656 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 OR6J1Q8NGC5 347 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 TFAP2BQ92481 460 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 DPH5Q9H2P9 285 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 RPF1Q9H9Y2 349 aaKnown RBP15.43■□□□□ 0.06
VRK3-217ENST00000599538 AVENQ9NQS1 362 aaPredicted RBP15.43■□□□□ 0.06
VRK3-217ENST00000599538 ADAM22Q9P0K1 906 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 KAT6AQ92794 2004 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 MAGEB2O15479 319 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 KRT19P08727 400 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 CTNNA2P26232 953 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 GRIK4Q16099 956 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 ZNF699Q32M78 642 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 TTC27Q6P3X3 843 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 PIK3R5Q8WYR1 880 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 ZIM3Q96PE6 472 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 SETD4Q9NVD3 440 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 FLRT1Q9NZU1 646 aa15.43■□□□□ 0.06
VRK3-217ENST00000599538 NXF1Q9UBU9 619 aaKnown RBP15.43■□□□□ 0.06
VRK3-217ENST00000599538 ZSWIM8A7E2V4 1837 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 CCDC66A2RUB6 948 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 CDH8P55286 799 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 TMEM62Q0P6H9 643 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 PPFIA1Q13136 1202 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 MAMLD1Q13495 774 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 SIX1Q15475 284 aaPredicted RBP15.42■□□□□ 0.06
VRK3-217ENST00000599538 FAM187BQ17R55 369 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 JADE1Q6IE81 842 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 MAATS1Q7Z4T9 603 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 IFNLR1Q8IU57 520 aaPredicted RBP15.42■□□□□ 0.06
VRK3-217ENST00000599538 KIAA0319LQ8IZA0 1049 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 NLRP7Q8WX94 980 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 HERPUD2Q9BSE4 406 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 CXCL16Q9H2A7 254 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 ABHD16BQ9H3Z7 469 aa15.42■□□□□ 0.06
VRK3-217ENST00000599538 IGF2BP3O00425 579 aaKnown RBP eCLIP15.41■□□□□ 0.06
VRK3-217ENST00000599538 POU5F1BQ06416 359 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 ORC1Q13415 861 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 NNTQ13423 1086 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 SURF1Q15526 300 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 SLC10A6Q3KNW5 377 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 ZNF771Q7L3S4 317 aaPredicted RBP15.41■□□□□ 0.06
VRK3-217ENST00000599538 PHF13Q86YI8 300 aaPredicted RBP15.41■□□□□ 0.06
VRK3-217ENST00000599538 C1orf131Q8NDD1 294 aaKnown RBP15.41■□□□□ 0.06
VRK3-217ENST00000599538 CCDC26Q8TAB7 109 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 CXorf38Q8TB03 319 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 ANKRD36BP1Q96IX9 119 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 SDCBP2Q9H190 292 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 FAM204AQ9H8W3 233 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.41■□□□□ 0.06
VRK3-217ENST00000599538 DYNC1LI2O43237 492 aaPredicted RBP15.41■□□□□ 0.06
VRK3-217ENST00000599538 TNNC2P02585 160 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 RARAP10276 462 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 HOXD8P13378 290 aaPredicted RBP15.41■□□□□ 0.06
VRK3-217ENST00000599538 RWDD2BP57060 319 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 RPL7AP62424 266 aaKnown RBP15.41■□□□□ 0.06
VRK3-217ENST00000599538 DR1Q01658 176 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 SEL1L2Q5TEA6 688 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 SLC13A5Q86YT5 568 aaPredicted RBP15.41■□□□□ 0.06
VRK3-217ENST00000599538 IQCKQ8N0W5 287 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 WDTC1Q8N5D0 677 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 SEC14L1Q92503 715 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 NAP1L3Q99457 506 aaPredicted RBP15.41■□□□□ 0.06
VRK3-217ENST00000599538 GINS2Q9Y248 185 aa15.41■□□□□ 0.06
VRK3-217ENST00000599538 MYO1FO00160 1098 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 TSPAN1O60635 241 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 ITGBL1O95965 494 aaPredicted RBP15.4■□□□□ 0.06
VRK3-217ENST00000599538 KRT14P02533 472 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 ITGB3P05106 788 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 MYBL1P10243 752 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 TMOD1P28289 359 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 PTGIRP43119 386 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 KIZQ2M2Z5 673 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 WDR72Q3MJ13 1102 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 PLEKHA7Q6IQ23 1121 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 TRIM72Q6ZMU5 477 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 WHAMMQ8TF30 809 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 ARL8AQ96BM9 186 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 CDHR5Q9HBB8 845 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 COL1A2P08123 1366 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 GOLGA6L10A0A0M3HER8 536 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 PHF2O75151 1096 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 MCF2P10911 925 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 MMP8P22894 467 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 CYP2C19P33261 490 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 KCNJ1P48048 391 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 HUNKP57058 714 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 TAS2R40P59535 323 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 TNFAIP2Q03169 654 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 CUL1Q13616 776 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 HIC1Q14526 733 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 CCL14Q16627 93 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 DGKDQ16760 1214 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 JAMLQ86YT9 394 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 MAGOHBQ96A72 148 aaKnown RBP15.4■□□□□ 0.06
VRK3-217ENST00000599538 TRIM11Q96F44 468 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 SCLT1Q96NL6 688 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 SH3GL2Q99962 352 aa15.4■□□□□ 0.06
VRK3-217ENST00000599538 NMRK2Q9NPI5 230 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms