RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 CEP120Q8N960 986 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 MICAL1Q8TDZ2 1067 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 SECISBP2LQ93073 1101 aaKnown RBP10.24□□□□□ -0.77
TRIM28-208ENST00000597172 CNOT6LQ96LI5 555 aaKnown RBP10.24□□□□□ -0.77
TRIM28-208ENST00000597172 FAM213AQ9BRX8 229 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 RNF39Q9H2S5 420 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 CHST12Q9NRB3 414 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 CPSF3Q9UKF6 684 aaKnown RBP10.24□□□□□ -0.77
TRIM28-208ENST00000597172 FBXL21Q9UKT6 434 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 ZMIZ1Q9ULJ6 1067 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 PIN4Q9Y237 131 aaKnown RBP10.24□□□□□ -0.77
TRIM28-208ENST00000597172 FRMD4BQ9Y2L6 1034 aa10.24□□□□□ -0.77
TRIM28-208ENST00000597172 ZNF233A6NK53 670 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 STAG3L1P0CL83 205 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 EPB41P11171 864 aaKnown RBP10.23□□□□□ -0.77
TRIM28-208ENST00000597172 EEF1GP26641 437 aaKnown RBP10.23□□□□□ -0.77
TRIM28-208ENST00000597172 COPB1P53618 953 aaKnown RBP10.23□□□□□ -0.77
TRIM28-208ENST00000597172 TPM4P67936 248 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 DLG4P78352 724 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 SHC2P98077 582 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 SPAG1Q07617 926 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 CYP24A1Q07973 514 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 PAK2Q13177 524 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 NR1I3Q14994 352 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 DUSP6Q16828 381 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 CCDC40Q4G0X9 1142 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 MIIPQ5JXC2 388 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 SARM1Q6SZW1 724 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 TMEM184AQ6ZMB5 413 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 FAM114A1Q8IWE2 563 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 SIX5Q8N196 739 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 KLHL23Q8NBE8 558 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 SMG8Q8ND04 991 aaKnown RBP10.23□□□□□ -0.77
TRIM28-208ENST00000597172 PARD3BQ8TEW8 1205 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 CDCA3Q99618 268 aaPredicted RBP10.23□□□□□ -0.77
TRIM28-208ENST00000597172 TUBGCP2Q9BSJ2 902 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 VPS16Q9H269 839 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 METTL14Q9HCE5 456 aaKnown RBP10.23□□□□□ -0.77
TRIM28-208ENST00000597172 KIAA1586Q9HCI6 787 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 INTS13Q9NVM9 706 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 RNF216Q9NWF9 866 aaPredicted RBP10.23□□□□□ -0.77
TRIM28-208ENST00000597172 TAB2Q9NYJ8 693 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 MAGEC2Q9UBF1 373 aaPredicted RBP10.23□□□□□ -0.77
TRIM28-208ENST00000597172 ARMCX3Q9UH62 379 aaPredicted RBP10.23□□□□□ -0.77
TRIM28-208ENST00000597172 SMG1Q96Q15 3661 aaKnown RBP10.23□□□□□ -0.77
TRIM28-208ENST00000597172 SPTA1P02549 2419 aa10.23□□□□□ -0.77
TRIM28-208ENST00000597172 ASXL3Q9C0F0 2248 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 A0A1B0GTH6 734 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 SLC30A4O14863 429 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 TEX33O43247 280 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 HOXB8P17481 243 aaPredicted RBP10.22□□□□□ -0.77
TRIM28-208ENST00000597172 KCNA4P22459 653 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 PMLP29590 882 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 GRM5P41594 1212 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 MTIF2P46199 727 aaKnown RBP10.22□□□□□ -0.77
TRIM28-208ENST00000597172 OSTNP61366 133 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 ENOX2Q16206 610 aaKnown RBP10.22□□□□□ -0.77
TRIM28-208ENST00000597172 SLC10A6Q3KNW5 377 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 DCAF4L1Q3SXM0 396 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 VWA3BQ502W6 1294 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 TWF2Q6IBS0 349 aaKnown RBP10.22□□□□□ -0.77
TRIM28-208ENST00000597172 INTS8Q75QN2 995 aaKnown RBP10.22□□□□□ -0.77
TRIM28-208ENST00000597172 MRPL10Q7Z7H8 261 aaKnown RBP10.22□□□□□ -0.77
TRIM28-208ENST00000597172 ZDHHC14Q8IZN3 488 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 TMC2Q8TDI7 906 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 LINC01599Q8WXQ3 324 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 ZNF516Q92618 1163 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 SLC35C1Q96A29 364 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 CCDC51Q96ER9 411 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 NECTIN4Q96NY8 510 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 ADAM2Q99965 735 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 ADPGKQ9BRR6 497 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 TRAIPQ9BWF2 469 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 CXCL16Q9H2A7 254 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 POMKQ9H5K3 350 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 RC3H2Q9HBD1 1191 aaKnown RBP10.22□□□□□ -0.77
TRIM28-208ENST00000597172 SNTG2Q9NY99 539 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 IFNKQ9P0W0 207 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 HES2Q9Y543 173 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 PCDHB2Q9Y5E7 798 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 TTC3P53804 2025 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 ZNF462Q96JM2 2506 aa10.22□□□□□ -0.77
TRIM28-208ENST00000597172 IGSF10Q6WRI0 2623 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 A0A0U1RQF3 1178 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 LRRIQ3A6PVS8 624 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-208ENST00000597172 LACTBL1A8MY62 500 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 ENPP3O14638 875 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 ZNF623O75123 536 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 SERPINC1P01008 464 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 CLTAP09496 248 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 TRIM49P0CI25 452 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 TRIM49CP0CI26 452 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 ZSCAN20P17040 1043 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-208ENST00000597172 RFX1P22670 979 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 TGM1P22735 817 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 VAMP7P51809 220 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 UBASH3AP57075 661 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 CLDN10P78369 228 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 FAM189BP81408 668 aa10.21□□□□□ -0.77
TRIM28-208ENST00000597172 PLCB2Q00722 1185 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms