RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 DRG2P55039 364 aaKnown RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 ITGA7Q13683 1181 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 RIPOR1Q6ZS17 1223 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 GPR141Q7Z602 305 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 ARID3BQ8IVW6 561 aaPredicted RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 BAP1Q92560 729 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 TRPV6Q9H1D0 765 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 WARS2Q9UGM6 360 aaKnown RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 TMED5Q9Y3A6 229 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 PFASO15067 1338 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 ART3Q13508 389 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 PKN1Q16512 942 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 ACAD11Q709F0 780 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 SLC13A5Q86YT5 568 aaPredicted RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 DHX36Q9H2U1 1008 aaKnown RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 HERC5Q9UII4 1024 aaKnown RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 RBMX2Q9Y388 322 aaKnown RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 USP1O94782 785 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 CSF1RP07333 972 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 UQCRBP14927 111 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 COMTP21964 271 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 CDH3P22223 829 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 SOX5P35711 763 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 MYL7Q01449 175 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 KLHL38Q2WGJ6 581 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 OR52E8Q6IFG1 317 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 CLNKQ7Z7G1 428 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 USP37Q86T82 979 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 ZNF34Q8IZ26 560 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 PDIK1LQ8N165 341 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 ENDOVQ8N8Q3 282 aaKnown RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 KCNK16Q96T55 309 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 CADM1Q9BY67 442 aaKnown RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 MROH7Q68CQ1 1323 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 PDLIM1O00151 329 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 CAMTA2O94983 1202 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 PSMC3P17980 439 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 NPEPPSP55786 919 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 MRPS15P82914 257 aaKnown RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 TMEM132AQ24JP5 1023 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 USH1GQ495M9 461 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 GALNTL6Q49A17 601 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 SYDE1Q6ZW31 735 aaPredicted RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 LARGE2Q8N3Y3 721 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 LINC00116Q8NCU8 138 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 ALKBH8Q96BT7 664 aaKnown RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 HSPBAP1Q96EW2 488 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 SHCBP1LQ9BZQ2 653 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 CHORDC1Q9UHD1 332 aaPredicted RBP12.94□□□□□ -0.34
LIG1-207ENST00000594759 DMTF1Q9Y222 760 aa12.94□□□□□ -0.34
LIG1-207ENST00000594759 ZBBXA8MT70 800 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 MAFGO15525 162 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 TBC1D12O60347 775 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 NCKAP1LP55160 1127 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 C6orf183Q5T699 404 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.93□□□□□ -0.34
LIG1-207ENST00000594759 RNF169Q8NCN4 708 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 KIAA0895Q8NCT3 520 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 ZNF564Q8TBZ8 553 aaPredicted RBP12.93□□□□□ -0.34
LIG1-207ENST00000594759 MTFR1LQ9H019 292 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 DDX28Q9NUL7 540 aaKnown RBP12.93□□□□□ -0.34
LIG1-207ENST00000594759 STK32BQ9NY57 414 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 WHRNQ9P202 907 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 NEU2Q9Y3R4 380 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 USP17L3A6NCW0 530 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 USP17L4A6NCW7 530 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 C2CD2LO14523 706 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 SEC24DO94855 1032 aaPredicted RBP12.93□□□□□ -0.34
LIG1-207ENST00000594759 NEK3P51956 506 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 MFSD5Q6N075 450 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 TMEM53Q6P2H8 277 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 USP17L1Q7RTZ2 530 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 SLC44A5Q8NCS7 719 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 RAD54LQ92698 747 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 SCHIP1Q9P0W5 487 aaPredicted RBP12.93□□□□□ -0.34
LIG1-207ENST00000594759 PRKAG3Q9UGI9 489 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 TAGLN3Q9UI15 199 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 GPC6Q9Y625 555 aaPredicted RBP12.93□□□□□ -0.34
LIG1-207ENST00000594759 FLT1P17948 1338 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 PLA2G4BP0C869 781 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 VCLP18206 1134 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 ATICP31939 592 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 NR1H2P55055 460 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 GPS1Q13098 491 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 ANKMY2Q8IV38 441 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 ARL8BQ9NVJ2 186 aa12.93□□□□□ -0.34
LIG1-207ENST00000594759 FOXO6A8MYZ6 492 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 BOLA2-SMG1P6H3BVE0 249 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 EDF1O60869 148 aaKnown RBP12.92□□□□□ -0.34
LIG1-207ENST00000594759 KRT37O76014 449 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 ATP2B4P23634 1241 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 PDCD4Q53EL6 469 aaKnown RBP12.92□□□□□ -0.34
LIG1-207ENST00000594759 DCUN1D2Q6PH85 259 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 NET1Q7Z628 596 aaPredicted RBP12.92□□□□□ -0.34
LIG1-207ENST00000594759 CLVS1Q8IUQ0 354 aaPredicted RBP12.92□□□□□ -0.34
LIG1-207ENST00000594759 PASD1Q8IV76 773 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 COX4I2Q96KJ9 171 aa12.92□□□□□ -0.34
LIG1-207ENST00000594759 FAM84BQ96KN1 310 aaPredicted RBP12.92□□□□□ -0.34
LIG1-207ENST00000594759 SLC13A1Q9BZW2 595 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms