RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 MKL2Q9ULH7 1088 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 PTCH2Q9Y6C5 1203 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.41□□□□□ -0.74
LIG3-216ENST00000593099 IGLV3-22A0A075B6J6 115 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 ZBED1O96006 694 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 CCL5P13501 91 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 SLC12A2P55011 1212 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 MYL6P60660 151 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 ATP11AP98196 1134 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 YWHAHQ04917 246 aaPredicted RBP10.41□□□□□ -0.74
LIG3-216ENST00000593099 FAM171A1Q5VUB5 890 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 GPAT2Q6NUI2 795 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 ARHGEF18Q6ZSZ5 1173 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 NDUFAF2Q8N183 169 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 TAB3Q8N5C8 712 aaPredicted RBP10.41□□□□□ -0.74
LIG3-216ENST00000593099 TBC1D31Q96DN5 1066 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 ERGIC2Q96RQ1 377 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 CHST12Q9NRB3 414 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 RNF14Q9UBS8 474 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 ZMYM2Q9UBW7 1377 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 ZNF536O15090 1300 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 A0A087X0B3 334 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 ENC1O14682 589 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 AP1G2O75843 785 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 MAP3K10Q02779 954 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 PALM2Q8IXS6 379 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 TAS1R2Q8TE23 839 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 TSC1Q92574 1164 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 NAGPAQ9UK23 515 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 PCDHA2Q9Y5H9 948 aa10.41□□□□□ -0.74
LIG3-216ENST00000593099 LACTBL1A8MY62 500 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 TREHO43280 583 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 CREB3O43889 395 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 VDRP11473 427 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 PDGFRAP16234 1089 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 EFHC1Q5JVL4 640 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 FIBCD1Q8N539 461 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.4□□□□□ -0.74
LIG3-216ENST00000593099 MRPS31Q92665 395 aaKnown RBP10.4□□□□□ -0.74
LIG3-216ENST00000593099 POP1Q99575 1024 aaKnown RBP10.4□□□□□ -0.74
LIG3-216ENST00000593099 SPON2Q9BUD6 331 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 IPO11Q9UI26 975 aaKnown RBP10.4□□□□□ -0.74
LIG3-216ENST00000593099 SH3BP1Q9Y3L3 701 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 SLC4A7Q9Y6M7 1214 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 UBR2Q8IWV8 1755 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 ITIH6Q6UXX5 1313 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 IRS2Q9Y4H2 1338 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 H3BRJ5 948 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 HTRA3P83110 453 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 GTF2BQ00403 316 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 PPIGQ13427 754 aaKnown RBP eCLIP10.4□□□□□ -0.744e-7■■■□□ 15.4
LIG3-216ENST00000593099 NR1I3Q14994 352 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 PSMD6Q15008 389 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 ACOT1Q86TX2 421 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 TMEM161BQ8NDZ6 487 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 WHAMMQ8TF30 809 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 RFFLQ8WZ73 363 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 MRRFQ96E11 262 aaKnown RBP10.4□□□□□ -0.74
LIG3-216ENST00000593099 EMILIN2Q9BXX0 1053 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 DHX35Q9H5Z1 703 aaKnown RBP10.4□□□□□ -0.74
LIG3-216ENST00000593099 VPS37BQ9H9H4 285 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 WDR70Q9NW82 654 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 PYCARDQ9ULZ3 195 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 SSU72P8A0A1W2PR75 194 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 PIK3R2O00459 728 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 TJP3O95049 919 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 DARSP14868 501 aaKnown RBP10.4□□□□□ -0.74
LIG3-216ENST00000593099 SCNN1GP51170 649 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 BCAR1P56945 870 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 ZNF792Q3KQV3 632 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 NOMO2Q5JPE7 1267 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 LRRC8DQ7L1W4 858 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 CROCCP2Q86T23 111 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 TTC13Q8NBP0 860 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 UBA3Q8TBC4 463 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 EPAS1Q99814 870 aa10.4□□□□□ -0.74
LIG3-216ENST00000593099 NIFKQ9BYG3 293 aaKnown RBP10.4□□□□□ -0.74
LIG3-216ENST00000593099 FARP1Q9Y4F1 1045 aaPredicted RBP10.4□□□□□ -0.74
LIG3-216ENST00000593099 HYIQ5T013 277 aa10.4□□□□□ -0.75
LIG3-216ENST00000593099 TRIM65Q6PJ69 517 aa10.4□□□□□ -0.75
LIG3-216ENST00000593099 MMS22LQ6ZRQ5 1243 aa10.4□□□□□ -0.75
LIG3-216ENST00000593099 CTAGE3PQ8IX95 158 aa10.4□□□□□ -0.75
LIG3-216ENST00000593099 ZNF513Q8N8E2 541 aaPredicted RBP10.4□□□□□ -0.75
LIG3-216ENST00000593099 KRT12Q99456 494 aa10.4□□□□□ -0.75
LIG3-216ENST00000593099 SPATS2LQ9NUQ6 558 aaKnown RBP10.4□□□□□ -0.75
LIG3-216ENST00000593099 KIF3CO14782 793 aa10.39□□□□□ -0.75
LIG3-216ENST00000593099 ATP5DP30049 168 aa10.39□□□□□ -0.75
LIG3-216ENST00000593099 SULT1E1P49888 294 aa10.39□□□□□ -0.75
LIG3-216ENST00000593099 EPHB3P54753 998 aa10.39□□□□□ -0.75
LIG3-216ENST00000593099 C7orf61Q8IZ16 206 aa10.39□□□□□ -0.75
LIG3-216ENST00000593099 RNF10Q8N5U6 811 aaKnown RBP10.39□□□□□ -0.75
LIG3-216ENST00000593099 MORC4Q8TE76 937 aa10.39□□□□□ -0.75
LIG3-216ENST00000593099 CCDC68Q9H2F9 335 aa10.39□□□□□ -0.75
LIG3-216ENST00000593099 MAFBQ9Y5Q3 323 aaPredicted RBP10.39□□□□□ -0.75
LIG3-216ENST00000593099 TOGARAM1Q9Y4F4 1720 aa10.39□□□□□ -0.75
LIG3-216ENST00000593099 ACO1P21399 889 aaKnown RBP10.39□□□□□ -0.75
LIG3-216ENST00000593099 KLRC2P26717 231 aa10.39□□□□□ -0.75
LIG3-216ENST00000593099 RHOT1Q8IXI2 618 aa10.39□□□□□ -0.75
LIG3-216ENST00000593099 CPA5Q8WXQ8 436 aa10.39□□□□□ -0.75
LIG3-216ENST00000593099 CDT1Q9H211 546 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms