RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 DHX58Q96C10 678 aa12.22□□□□□ -0.45
SMAD4-211ENST00000590499 B3GALT6Q96L58 329 aa12.22□□□□□ -0.45
SMAD4-211ENST00000590499 UROC1Q96N76 676 aa12.22□□□□□ -0.45
SMAD4-211ENST00000590499 EMILIN2Q9BXX0 1053 aa12.22□□□□□ -0.45
SMAD4-211ENST00000590499 FGFBP2Q9BYJ0 223 aa12.22□□□□□ -0.45
SMAD4-211ENST00000590499 TRIM9Q9C026 710 aa12.22□□□□□ -0.45
SMAD4-211ENST00000590499 GOLGA2P5Q9HBQ8 144 aa12.22□□□□□ -0.45
SMAD4-211ENST00000590499 SSX2IPQ9Y2D8 614 aa12.22□□□□□ -0.45
SMAD4-211ENST00000590499 STYXL1Q9Y6J8 313 aa12.22□□□□□ -0.45
SMAD4-211ENST00000590499 ANKRD63C9JTQ0 380 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 C2CD2LO14523 706 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 OGTO15294 1046 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 TADA2AO75478 443 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 KCNA1Q09470 495 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 BECN1Q14457 450 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 ENOX2Q16206 610 aaKnown RBP12.21□□□□□ -0.45
SMAD4-211ENST00000590499 KYAT1Q16773 422 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 HERC4Q5GLZ8 1057 aaPredicted RBP12.21□□□□□ -0.45
SMAD4-211ENST00000590499 DCLRE1AQ6PJP8 1040 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 GJD3Q8N144 294 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 C18orf25Q96B23 403 aaPredicted RBP12.21□□□□□ -0.45
SMAD4-211ENST00000590499 IKZF4Q9H2S9 585 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 MRPL44Q9H9J2 332 aaKnown RBP12.21□□□□□ -0.45
SMAD4-211ENST00000590499 PLEKHA5Q9HAU0 1116 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 MAGEF1Q9HAY2 307 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 SLC38A7Q9NVC3 462 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 PANK4Q9NVE7 773 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 DZANK1Q9NVP4 752 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 TBC1D7Q9P0N9 293 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 FNIP2Q9P278 1114 aa12.21□□□□□ -0.45
SMAD4-211ENST00000590499 POLR2DO15514 142 aaKnown RBP12.2□□□□□ -0.46
SMAD4-211ENST00000590499 B3GAT3O94766 335 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 PAPLNO95428 1278 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 C1RP00736 705 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 ADH1AP07327 375 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 MYBP10242 640 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 IDEP14735 1019 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 FGFR3P22607 806 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 ADSSP30520 456 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 MATR3P43243 847 aaKnown RBP eCLIP12.2□□□□□ -0.46
SMAD4-211ENST00000590499 KRT85P78386 507 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 EHHADHQ08426 723 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 ELAVL2Q12926 359 aaKnown RBP12.2□□□□□ -0.46
SMAD4-211ENST00000590499 ZBTB6Q15916 424 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 L1TD1Q5T7N2 865 aaKnown RBP12.2□□□□□ -0.46
SMAD4-211ENST00000590499 FAM171A1Q5VUB5 890 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.2□□□□□ -0.46
SMAD4-211ENST00000590499 ARMC2Q8NEN0 867 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 FEZF2Q8TBJ5 459 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 RIN2Q8WYP3 895 aaPredicted RBP12.2□□□□□ -0.46
SMAD4-211ENST00000590499 PIK3R5Q8WYR1 880 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 FBXL18Q96ME1 805 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 C7orf25Q9BPX7 421 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 TTPALQ9BTX7 342 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 MSTO1Q9BUK6 570 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 ADAM7Q9H2U9 754 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.2□□□□□ -0.46
SMAD4-211ENST00000590499 FAM13BQ9NYF5 915 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 CDH22Q9UJ99 828 aa12.2□□□□□ -0.46
SMAD4-211ENST00000590499 CPSF3Q9UKF6 684 aaKnown RBP12.2□□□□□ -0.46
SMAD4-211ENST00000590499 FAM237AA0A1B0GTK4 181 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 PODXLO00592 558 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 GCNT3O95395 438 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 CMA1P23946 247 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 KLRC2P26717 231 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 RPL9P32969 192 aaKnown RBP12.19□□□□□ -0.46
SMAD4-211ENST00000590499 ITIH3Q06033 890 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 NNTQ13423 1086 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 ALCAMQ13740 583 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 CBX2Q14781 532 aaPredicted RBP12.19□□□□□ -0.46
SMAD4-211ENST00000590499 TPRNQ4KMQ1 711 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 C4orf48Q5BLP8 95 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 ADALQ6DHV7 355 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 SLFN12LQ6IEE8 588 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 KIAA1841Q6NSI8 718 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 PRSS55Q6UWB4 352 aaPredicted RBP12.19□□□□□ -0.46
SMAD4-211ENST00000590499 CRELD2Q6UXH1 353 aaPredicted RBP12.19□□□□□ -0.46
SMAD4-211ENST00000590499 BPHLQ86WA6 291 aaPredicted RBP12.19□□□□□ -0.46
SMAD4-211ENST00000590499 CCDC65Q8IXS2 484 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 TMEM130Q8N3G9 435 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 C12orf76Q8N812 135 aaPredicted RBP12.19□□□□□ -0.46
SMAD4-211ENST00000590499 TMEM87AQ8NBN3 555 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 GLIS3Q8NEA6 775 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 LNX1Q8TBB1 728 aaPredicted RBP12.19□□□□□ -0.46
SMAD4-211ENST00000590499 SPATA32Q96LK8 384 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 ACCSQ96QU6 501 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 APOL5Q9BWW9 433 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 PHF7Q9BWX1 381 aaPredicted RBP12.19□□□□□ -0.46
SMAD4-211ENST00000590499 LRRC27Q9C0I9 530 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 TUBGCP4Q9UGJ1 667 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 KCNH3Q9ULD8 1083 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 HPSEQ9Y251 543 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 ATP6V1DQ9Y5K8 247 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 SCN1AP35498 2009 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 DOCK6Q96HP0 2047 aa12.19□□□□□ -0.46
SMAD4-211ENST00000590499 LACTBL1A8MY62 500 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 LOC730098B7Z3J9 87 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 GLUD1P00367 558 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 PFKFB1P16118 471 aa12.18□□□□□ -0.46
SMAD4-211ENST00000590499 RPL17P18621 184 aaKnown RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms