RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 DYMQ7RTS9 669 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 PALB2Q86YC2 1186 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 TCEAL8Q8IYN2 117 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 SYCP3Q8IZU3 236 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 SPATA18Q8TC71 538 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 POMGNT1Q8WZA1 660 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 KIF12Q96FN5 646 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 ZMAT2Q96NC0 199 aaKnown RBP11.39□□□□□ -0.59
LIG3-212ENST00000590181 SCAND2PQ9GZW5 306 aaPredicted RBP11.39□□□□□ -0.59
LIG3-212ENST00000590181 TBC1D17Q9HA65 648 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 CA14Q9ULX7 337 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 USP20Q9Y2K6 914 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 COL4A3Q01955 1670 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 ACACBO00763 2458 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 UBE4BO95155 1302 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 OR6C75A6NL08 312 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 LACTBL1A8MY62 500 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 TBC1D4O60343 1298 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 N4BP1O75113 896 aaKnown RBP11.38□□□□□ -0.59
LIG3-212ENST00000590181 CXCL8P10145 99 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 IDEP14735 1019 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 NMT1P30419 496 aaKnown RBP11.38□□□□□ -0.59
LIG3-212ENST00000590181 MCM4P33991 863 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 OR1D2P34982 312 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 PSMD2Q13200 908 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 PLD1Q13393 1074 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 MYBPC2Q14324 1141 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 TMEM132DQ14C87 1099 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 ENOX2Q16206 610 aaKnown RBP11.38□□□□□ -0.59
LIG3-212ENST00000590181 E2F4Q16254 413 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 AXDND1Q5T1B0 1012 aaPredicted RBP11.38□□□□□ -0.59
LIG3-212ENST00000590181 FAM173BQ6P4H8 233 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 ZC3H14Q6PJT7 736 aaKnown RBP11.38□□□□□ -0.59
LIG3-212ENST00000590181 CD300LGQ6UXG3 332 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 USP37Q86T82 979 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 SFR1Q86XK3 245 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 ELMOD1Q8N336 334 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 CEP120Q8N960 986 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 C7orf25Q9BPX7 421 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 SEMA4AQ9H3S1 761 aa11.38□□□□□ -0.59
LIG3-212ENST00000590181 TFIP11Q9UBB9 837 aaKnown RBP11.38□□□□□ -0.59
LIG3-212ENST00000590181 CHD8Q9HCK8 2581 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 KRBA1A5PL33 1030 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 F8W810 466 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 ZNF197O14709 1029 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 PRPF40AO75400 957 aaKnown RBP11.37□□□□□ -0.59
LIG3-212ENST00000590181 KIF20AO95235 890 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 GCNT3O95395 438 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 SLFN14P0C7P3 912 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 HARSP12081 509 aaKnown RBP11.37□□□□□ -0.59
LIG3-212ENST00000590181 CMA1P23946 247 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 TKTP29401 623 aaKnown RBP11.37□□□□□ -0.59
LIG3-212ENST00000590181 LILRA4P59901 499 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 KRT85P78386 507 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 CACNB1Q02641 598 aaPredicted RBP11.37□□□□□ -0.59
LIG3-212ENST00000590181 YWHAHQ04917 246 aaPredicted RBP11.37□□□□□ -0.59
LIG3-212ENST00000590181 SOX4Q06945 474 aaPredicted RBP11.37□□□□□ -0.59
LIG3-212ENST00000590181 VARS2Q5ST30 1063 aaKnown RBP11.37□□□□□ -0.59
LIG3-212ENST00000590181 RESP18Q5W5W9 173 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 PRSS55Q6UWB4 352 aaPredicted RBP11.37□□□□□ -0.59
LIG3-212ENST00000590181 CEP57L1Q8IYX8 460 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 GOLGA5Q8TBA6 731 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 LRRC15Q8TF66 581 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 HASPINQ8TF76 798 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 C2orf15Q8WU43 125 aaKnown RBP11.37□□□□□ -0.59
LIG3-212ENST00000590181 TMEM174Q8WUU8 243 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 RSAD2Q8WXG1 361 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 ZNF707Q96C28 371 aaPredicted RBP11.37□□□□□ -0.59
LIG3-212ENST00000590181 TRIM9Q9C026 710 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 GPR88Q9GZN0 384 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 FOXD4L1Q9NU39 408 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 GDE1Q9NZC3 331 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 TBC1D7Q9P0N9 293 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 AFF4Q9UHB7 1163 aaKnown RBP11.37□□□□□ -0.59
LIG3-212ENST00000590181 ZMYM5Q9UJ78 669 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 R3HCC1Q9Y3T6 440 aaKnown RBP11.37□□□□□ -0.59
LIG3-212ENST00000590181 CDY1Q9Y6F8 540 aa11.37□□□□□ -0.59
LIG3-212ENST00000590181 SPTBN2O15020 2390 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 ANO9A1A5B4 782 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 PIRO00625 290 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 EXTL3O43909 919 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 FGF19O95750 216 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 CYP11A1P05108 521 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 C8AP07357 584 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 FAM163BP0C2L3 166 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 SRFP11831 508 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 ODC1P11926 461 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 PTPN2P17706 415 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 CTXN3Q4LDR2 81 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 ZC2HC1CQ53FD0 456 aaPredicted RBP11.36□□□□□ -0.59
LIG3-212ENST00000590181 ARMCX5Q6P1M9 558 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 SHC4Q6S5L8 630 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 DSTYKQ6XUX3 929 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 MTSS1LQ765P7 747 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 METTL23Q86XA0 190 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 PDILTQ8N807 584 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 C3orf58Q8NDZ4 430 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 ZNF507Q8TCN5 953 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 RABGGTAQ92696 567 aa11.36□□□□□ -0.59
LIG3-212ENST00000590181 C18orf25Q96B23 403 aaPredicted RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms