RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 KCTD10Q9H3F6 313 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 SEMA6BQ9H3T3 888 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 IFT122Q9HBG6 1241 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 AGPAT3Q9NRZ7 376 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 TYW1Q9NV66 732 aaKnown RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 CGNQ9P2M7 1197 aaKnown RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 KANSL3Q9P2N6 904 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 ANKFY1Q9P2R3 1169 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 MAGEC2Q9UBF1 373 aaPredicted RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 NFE2L3Q9Y4A8 694 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 ZMYM2Q9UBW7 1377 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 TRIP12Q14669 1992 aaPredicted RBP5.78□□□□□ -1.48
LIG3-210ENST00000588109 CNTNAP2Q9UHC6 1331 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 TISP43B9A030 160 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 ACKR2O00590 384 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 CETN3O15182 167 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 CLIC2O15247 247 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 CLDN3O15551 220 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 B4GALT5O43286 388 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 TGFB1I1O43294 461 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 TSPAN1O60635 241 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 EXOC3O60645 756 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 RPS6KA5O75582 802 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 GNA14O95837 355 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 CHRNA1P02708 482 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 NR3C1P04150 777 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 EPB41P11171 864 aaKnown RBP5.78□□□□□ -1.48
LIG3-210ENST00000588109 CKBP12277 381 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 EDN3P14138 238 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 NID1P14543 1247 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 SELPP16109 830 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 EN2P19622 333 aaPredicted RBP5.78□□□□□ -1.48
LIG3-210ENST00000588109 FGFR4P22455 802 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 EIF4BP23588 611 aaKnown RBP5.78□□□□□ -1.48
LIG3-210ENST00000588109 SNRPFP62306 86 aaKnown RBP5.78□□□□□ -1.48
LIG3-210ENST00000588109 FKBP3Q00688 224 aaKnown RBP5.78□□□□□ -1.48
LIG3-210ENST00000588109 PAK2Q13177 524 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 ADAM9Q13443 819 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 HSP90AA2PQ14568 343 aaPredicted RBP5.78□□□□□ -1.48
LIG3-210ENST00000588109 SNX17Q15036 470 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 IQCB1Q15051 598 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 PCBP1Q15365 356 aaKnown RBP eCLIP5.78□□□□□ -1.48
LIG3-210ENST00000588109 EDRF1Q3B7T1 1238 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 ZNF568Q3ZCX4 644 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 CCDC40Q4G0X9 1142 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 ZNF618Q5T7W0 954 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 ATF7IP2Q5U623 682 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 SLFN12LQ6IEE8 588 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 TTI2Q6NXR4 508 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 ZPBP2Q6X784 338 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 LRRC8DQ7L1W4 858 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 ANKRD33Q7Z3H0 272 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 APBB1IPQ7Z5R6 666 aaPredicted RBP5.78□□□□□ -1.48
LIG3-210ENST00000588109 RPAINQ86UA6 219 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 FAM114A1Q8IWE2 563 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 IL22RA1Q8N6P7 574 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 DHX38Q92620 1227 aaKnown RBP5.78□□□□□ -1.48
LIG3-210ENST00000588109 EEF2KMTQ96G04 330 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 CPB2Q96IY4 423 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 TOX2Q96NM4 488 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 CTAGE1Q96RT6 745 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 MSTO1Q9BUK6 570 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 SRRTQ9BXP5 876 aaKnown RBP5.78□□□□□ -1.48
LIG3-210ENST00000588109 MUC3BQ9H195 1237 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 IKZF4Q9H2S9 585 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 FZD8Q9H461 694 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 PCIF1Q9H4Z3 704 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 MINDY3Q9H8M7 445 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 PRDM5Q9NQX1 630 aaPredicted RBP5.78□□□□□ -1.48
LIG3-210ENST00000588109 TMEM39AQ9NV64 488 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 FANCLQ9NW38 375 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 TRAF3IP3Q9Y228 551 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 PIN4Q9Y237 131 aaKnown RBP5.78□□□□□ -1.48
LIG3-210ENST00000588109 FRMD4BQ9Y2L6 1034 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 SIP14410 1827 aa5.78□□□□□ -1.48
LIG3-210ENST00000588109 GOLGA8IPA6NC78 632 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 CCDC85CA6NKD9 419 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 GOLGA8JA6NMD2 632 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 KCNJ18B7U540 433 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 ANKRD63C9JTQ0 380 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 PES1O00541 588 aaKnown RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 N4BP3O15049 544 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 KIAA0391O15091 583 aaKnown RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 GPR182O15218 404 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 TOM1L1O75674 476 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 KIF4AO95239 1232 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 SERPINC1P01008 464 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 CD4P01730 458 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 PIGRP01833 764 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 EDN1P05305 212 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 TPM2P07951 284 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 CLTBP09497 229 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 IQCF3P0C7M6 154 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 GHRP10912 638 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 ZSCAN20P17040 1043 aaPredicted RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 ARF4P18085 180 aaPredicted RBP5.77□□□□□ -1.49
LIG3-210ENST00000588109 GARTP22102 1010 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 COL8A1P27658 744 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 MAPK1P28482 360 aa5.77□□□□□ -1.49
LIG3-210ENST00000588109 PSMC2P35998 433 aaKnown RBP5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms