RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 CDX2Q99626 313 aaPredicted RBP16.71■□□□□ 0.27
SS18-216ENST00000580751 TCF25Q9BQ70 676 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 VN1R3Q9BXE9 311 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 GPR62Q9BZJ7 368 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 ZBP1Q9H171 429 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 NGRNQ9NPE2 291 aaKnown RBP16.71■□□□□ 0.27
SS18-216ENST00000580751 ENTPD7Q9NQZ7 604 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 AGAP1Q9UPQ3 857 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 SSX2IPQ9Y2D8 614 aa16.71■□□□□ 0.27
SS18-216ENST00000580751 ARHGEF37A1IGU5 675 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 PPEF2O14830 753 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 PHACTR2O75167 634 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 TRIM49P0CI25 452 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 TRIM49CP0CI26 452 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 CTSAP10619 480 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 GLUD2P49448 558 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 AARSP49588 968 aaKnown RBP eCLIP16.7■□□□□ 0.26
SS18-216ENST00000580751 ZNF75DP51815 510 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 LILRA4P59901 499 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 CCDC173Q0VFZ6 552 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 MYO1EQ12965 1108 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 TRPC3Q13507 836 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 CAMK1Q14012 370 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 SMC1AQ14683 1233 aaKnown RBP16.7■□□□□ 0.26
SS18-216ENST00000580751 KRT31Q15323 416 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 MAN2A1Q16706 1144 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 ZACNQ401N2 412 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 SV2CQ496J9 727 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 C1orf220Q5T0J3 134 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 TCERG1LQ5VWI1 586 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 KIAA1841Q6NSI8 718 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 CD300LGQ6UXG3 332 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.7■□□□□ 0.26
SS18-216ENST00000580751 APTXQ7Z2E3 356 aaKnown RBP16.7■□□□□ 0.26
SS18-216ENST00000580751 TMC7Q7Z402 723 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 GPR65Q8IYL9 337 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 CXorf38Q8TB03 319 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 MICAL1Q8TDZ2 1067 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 ZNF516Q92618 1163 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 FAM84AQ96KN4 292 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 SUSD3Q96L08 255 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 SIX4Q9UIU6 781 aa16.7■□□□□ 0.26
SS18-216ENST00000580751 FSCN2O14926 492 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 SYN3O14994 580 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 ADCY5O95622 1261 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 FOSL2P15408 326 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 IGFBP4P22692 258 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 MTIF2P46199 727 aaKnown RBP16.69■□□□□ 0.26
SS18-216ENST00000580751 BRCC3P46736 316 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 MXI1P50539 228 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 ERVFC1P60507 584 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 PLCB2Q00722 1185 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 ADGRE1Q14246 886 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 NR1I3Q14994 352 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 FAM171A1Q5VUB5 890 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 TDRD10Q5VZ19 366 aaKnown RBP16.69■□□□□ 0.26
SS18-216ENST00000580751 PDXDC1Q6P996 788 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 DSTYKQ6XUX3 929 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 SV2AQ7L0J3 742 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 TRIM59Q8IWR1 403 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 TMEM130Q8N3G9 435 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 MYLIPQ8WY64 445 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 PPP2R3CQ969Q6 453 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 SLC35C1Q96A29 364 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 PDLIM2Q96JY6 352 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 TUBGCP2Q9BSJ2 902 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 TTPALQ9BTX7 342 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 TMEM8AQ9HCN3 771 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 RTN4Q9NQC3 1192 aaKnown RBP16.69■□□□□ 0.26
SS18-216ENST00000580751 MRPL17Q9NRX2 175 aaKnown RBP16.69■□□□□ 0.26
SS18-216ENST00000580751 CHST7Q9NS84 486 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 IFNKQ9P0W0 207 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 IRAK3Q9Y616 596 aa16.69■□□□□ 0.26
SS18-216ENST00000580751 PRRC2BQ5JSZ5 2229 aaKnown RBP16.69■□□□□ 0.26
SS18-216ENST00000580751 MYO7AQ13402 2215 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 LGALS16A8MUM7 142 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 KPNA7A9QM74 516 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 I3L4J1 428 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 M0QZQ0 153 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 CSPG5O95196 566 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 C4BPAP04003 597 aaKnown RBP16.68■□□□□ 0.26
SS18-216ENST00000580751 FGFR3P22607 806 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 IGFBP6P24592 240 aaPredicted RBP16.68■□□□□ 0.26
SS18-216ENST00000580751 GCLMP48507 274 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 COPB1P53618 953 aaKnown RBP16.68■□□□□ 0.26
SS18-216ENST00000580751 DSG1Q02413 1049 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 CREMQ03060 361 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 PPP3CAQ08209 521 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 PTPN14Q15678 1187 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 PLPP4Q5VZY2 271 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 KRT39Q6A163 491 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 C15orf39Q6ZRI6 1047 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 APPL2Q8NEU8 664 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 HPDLQ96IR7 371 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 PPP1R9BQ96SB3 815 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 NSUN3Q9H649 340 aaKnown RBP16.68■□□□□ 0.26
SS18-216ENST00000580751 MMRN2Q9H8L6 949 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 PCDHB8Q9UN66 801 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 MTCH2Q9Y6C9 303 aa16.68■□□□□ 0.26
SS18-216ENST00000580751 SCN1AP35498 2009 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms