RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ASTN2O75129 1339 aaPredicted RBP6.93□□□□□ -1.3
VPS53-212ENST00000572259 AKAP11Q9UKA4 1901 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 ARAP2Q8WZ64 1704 aa6.93□□□□□ -1.3
VPS53-212ENST00000572259 CCDC66A2RUB6 948 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 TCP10L2B9ZVM9 353 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 BAG3O95817 575 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 EFEMP2O95967 443 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 MPOP05164 745 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 ID4P47928 161 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 SCNN1BP51168 640 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 BTKQ06187 659 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 TRIM14Q14142 442 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 KIF22Q14807 665 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 CRY1Q16526 586 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 ADGRF1Q5T601 910 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 C20orf194Q5TEA3 1177 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 PIK3R6Q5UE93 754 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 ARMC3Q5W041 872 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 CDCA2Q69YH5 1023 aaPredicted RBP6.92□□□□□ -1.3
VPS53-212ENST00000572259 CYP4F22Q6NT55 531 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 ZCCHC8Q6NZY4 707 aaKnown RBP6.92□□□□□ -1.3
VPS53-212ENST00000572259 EP400NLQ6ZTU2 488 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 CBLL1Q75N03 491 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 C16orf59Q7L2K0 433 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 SRGAP1Q7Z6B7 1085 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 FAM83AQ86UY5 434 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 AACSQ86V21 672 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 RIOX2Q8IUF8 465 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 CMTR2Q8IYT2 770 aaKnown RBP6.92□□□□□ -1.3
VPS53-212ENST00000572259 Q8N1Y9 231 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 IGSF22Q8N9C0 903 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 HSPBAP1Q96EW2 488 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 EIF2AK1Q9BQI3 630 aaKnown RBP6.92□□□□□ -1.3
VPS53-212ENST00000572259 LRRCC1Q9C099 1032 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 SLC6A17Q9H1V8 727 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 UNC45AQ9H3U1 944 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 SH3GLB2Q9NR46 395 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 RAI14Q9P0K7 980 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 HMG20BQ9P0W2 317 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 NUDT5Q9UKK9 219 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 GJD2Q9UKL4 321 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 AFG3L2Q9Y4W6 797 aa6.92□□□□□ -1.3
VPS53-212ENST00000572259 TTC36A6NLP5 189 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 GOLIM4O00461 696 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 KRIT1O00522 736 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 CA12O43570 354 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 MAFKO60675 156 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 CNOT4O95628 575 aaKnown RBP6.91□□□□□ -1.3
VPS53-212ENST00000572259 MT-CO1P00395 513 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 GLI1P08151 1106 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 NCAM1P13591 858 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 PRDX5P30044 214 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 USP14P54578 494 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 ERVK-21P61565 698 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 MAP3K12Q12852 859 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 ATP13A4Q4VNC1 1196 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 PRAMEF18Q5VWM3 479 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 APOBEC3HQ6NTF7 200 aaKnown RBP6.91□□□□□ -1.3
VPS53-212ENST00000572259 ZSWIM9Q86XI8 627 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 DCP2Q8IU60 420 aaKnown RBP6.91□□□□□ -1.3
VPS53-212ENST00000572259 KRTAP19-1Q8IUB9 90 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 EAF2Q96CJ1 260 aaPredicted RBP6.91□□□□□ -1.3
VPS53-212ENST00000572259 INTS4Q96HW7 963 aaKnown RBP6.91□□□□□ -1.3
VPS53-212ENST00000572259 SGCZQ96LD1 299 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 CRB3Q9BUF7 120 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 AP5M1Q9H0R1 490 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 CDIP1Q9H305 208 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 AGO4Q9HCK5 861 aaKnown RBP6.91□□□□□ -1.3
VPS53-212ENST00000572259 IL1RAPL2Q9NP60 686 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 USP40Q9NVE5 1235 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 FBLN5Q9UBX5 448 aa6.91□□□□□ -1.3
VPS53-212ENST00000572259 PAPPA2Q9BXP8 1791 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 NUDT19A8MXV4 375 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 UBE2Q2LH0YL09 131 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 WNT9AO14904 365 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 MTA2O94776 668 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 MBD4O95243 580 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 CYBBP04839 570 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 HNRNPCP07910 306 aaKnown RBP eCLIP6.9□□□□□ -1.31e-6■■□□□ 11.4
VPS53-212ENST00000572259 HSPA1AP0DMV8 641 aaKnown RBP6.9□□□□□ -1.3
VPS53-212ENST00000572259 HSPA1BP0DMV9 641 aaKnown RBP6.9□□□□□ -1.3
VPS53-212ENST00000572259 GLI4P10075 376 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 COL6A2P12110 1019 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 CAPN3P20807 821 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 ATICP31939 592 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 MCAMP43121 646 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 IRAK1P51617 712 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 ZBED6P86452 979 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 MECOMQ03112 1051 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 KLF1Q13351 362 aaPredicted RBP6.9□□□□□ -1.3
VPS53-212ENST00000572259 PRKG1Q13976 671 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 NR1I3Q14994 352 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 RAB3GAP1Q15042 981 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 TUBB8Q3ZCM7 444 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 NAA16Q6N069 864 aaPredicted RBP6.9□□□□□ -1.3
VPS53-212ENST00000572259 CDC42EP5Q6NZY7 148 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 FAM180BQ6P0A1 224 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 TLDC1Q6P9B6 456 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 PAQR3Q6TCH7 311 aa6.9□□□□□ -1.3
VPS53-212ENST00000572259 SLC41A1Q8IVJ1 513 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms