RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 OR6C75A6NL08 312 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 MAGEA9P43362 315 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 GTF2BQ00403 316 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 PLD1Q13393 1074 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 UBXN2BQ14CS0 331 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 TANGO2Q6ICL3 276 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 DSTYKQ6XUX3 929 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 RNF19BQ6ZMZ0 732 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 MAP4K3Q8IVH8 894 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 BEST2Q8NFU1 509 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 TCEAL4Q96EI5 215 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 ZFP14Q9HCL3 533 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 ASAH2Q9NR71 780 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 FRYLO94915 3013 aa20.34■□□□□ 0.85
CLN3-218ENST00000565688 VPS37CA5D8V6 355 aaPredicted RBP20.33■□□□□ 0.85
CLN3-218ENST00000565688 FAM170BA6NMN3 283 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 SP9P0CG40 484 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 GLULP15104 373 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 TYMPP19971 482 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 DDIT3P35638 169 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 EPHA5P54756 1037 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 GRIN1Q05586 938 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 CUL4AQ13619 759 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 FAM78AQ5JUQ0 283 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 ZBTB41Q5SVQ8 909 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 SPATA1Q5VX52 437 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 KRI1Q8N9T8 703 aaKnown RBP20.33■□□□□ 0.85
CLN3-218ENST00000565688 DNASE1L2Q92874 299 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 PLA2G2FQ9BZM2 168 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 ST6GALNAC4Q9H4F1 302 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 LTB4R2Q9NPC1 389 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 CEP72Q9P209 647 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 CPSF3Q9UKF6 684 aaKnown RBP20.33■□□□□ 0.85
CLN3-218ENST00000565688 MRPS17Q9Y2R5 130 aaKnown RBP20.33■□□□□ 0.85
CLN3-218ENST00000565688 DERAQ9Y315 318 aa20.33■□□□□ 0.85
CLN3-218ENST00000565688 TIMM13Q9Y5L4 95 aaPredicted RBP20.33■□□□□ 0.85
CLN3-218ENST00000565688 NCAM2O15394 837 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 LMNAP02545 664 aaKnown RBP20.32■□□□□ 0.84
CLN3-218ENST00000565688 FCARP24071 287 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 CCR2P41597 374 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 GPR17Q13304 367 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 MYBPC2Q14324 1141 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 OVOS1Q6IE37 1185 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 JADE1Q6IE81 842 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 SLFN12LQ6IEE8 588 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 SLC39A4Q6P5W5 647 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 ZNF852Q6ZMS4 543 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 TPRG1Q6ZUI0 275 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 KCNG4Q8TDN1 519 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 SMARCD2Q92925 531 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 FAM212AQ96EL1 285 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 ASB16Q96NS5 453 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 FIZ1Q96SL8 496 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 CCDC39Q9UFE4 941 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 YIPF1Q9Y548 306 aa20.32■□□□□ 0.84
CLN3-218ENST00000565688 LRRN2O75325 713 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 ODC1P11926 461 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 MYL4P12829 197 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 NMT1P30419 496 aaKnown RBP20.31■□□□□ 0.84
CLN3-218ENST00000565688 EPHB3P54753 998 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 LILRA4P59901 499 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 TMEM132DQ14C87 1099 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 POTEHQ6S545 545 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 HS6ST3Q8IZP7 471 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 TMEM130Q8N3G9 435 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 BORCS6Q96GS4 357 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 TRMT61BQ9BVS5 477 aaKnown RBP20.31■□□□□ 0.84
CLN3-218ENST00000565688 GPR88Q9GZN0 384 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 ASB7Q9H672 318 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 BRD9Q9H8M2 597 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 SPATA6Q9NWH7 488 aaPredicted RBP20.31■□□□□ 0.84
CLN3-218ENST00000565688 STK17AQ9UEE5 414 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 R4GN57 208 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 MIA3Q5JRA6 1907 aa20.31■□□□□ 0.84
CLN3-218ENST00000565688 LAMTOR5O43504 91 aa20.3■□□□□ 0.84
CLN3-218ENST00000565688 GUCY2FP51841 1108 aa20.3■□□□□ 0.84
CLN3-218ENST00000565688 POU5F1Q01860 360 aaKnown RBP20.3■□□□□ 0.84
CLN3-218ENST00000565688 ZNF528Q3MIS6 628 aa20.3■□□□□ 0.84
CLN3-218ENST00000565688 ADALQ6DHV7 355 aa20.3■□□□□ 0.84
CLN3-218ENST00000565688 ARMCX5Q6P1M9 558 aa20.3■□□□□ 0.84
CLN3-218ENST00000565688 IRF7Q92985 503 aa20.3■□□□□ 0.84
CLN3-218ENST00000565688 HVCN1Q96D96 273 aa20.3■□□□□ 0.84
CLN3-218ENST00000565688 EPSTI1Q96J88 318 aa20.3■□□□□ 0.84
CLN3-218ENST00000565688 TRPV4Q9HBA0 871 aa20.3■□□□□ 0.84
CLN3-218ENST00000565688 HEBP1Q9NRV9 189 aa20.3■□□□□ 0.84
CLN3-218ENST00000565688 FBXO4Q9UKT5 387 aa20.3■□□□□ 0.84
CLN3-218ENST00000565688 C2CD2Q9Y426 696 aa20.3■□□□□ 0.84
CLN3-218ENST00000565688 MTF2Q9Y483 593 aaPredicted RBP20.3■□□□□ 0.84
CLN3-218ENST00000565688 STYXL1Q9Y6J8 313 aa20.3■□□□□ 0.84
CLN3-218ENST00000565688 EP300Q09472 2414 aaPredicted RBP20.29■□□□□ 0.84
CLN3-218ENST00000565688 MAN2B1O00754 1011 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 MOSPD3O75425 235 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 OR4Q2P0C623 313 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 PSMC3P17980 439 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 CD72P21854 359 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 TXLNAP40222 546 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 RPS9P46781 194 aaKnown RBP20.29■□□□□ 0.84
CLN3-218ENST00000565688 ALDH1A3P47895 512 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 ACOT2P49753 483 aa20.29■□□□□ 0.84
CLN3-218ENST00000565688 DUSP4Q13115 394 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms