RNA–Protein interactions for RNA: ENST00000565379.1

NME3-208, Transcript of NME/NM23 nucleoside diphosphate kinase 3, human

TSL 2

Gene NME3, Length 911 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NME3-208	ENST00000565379	NGRN	Q9NPE2	291 aa	Known RBP	28.02	■■■□□ 2.08
NME3-208	ENST00000565379	ARMCX3	Q9UH62	379 aa	Predicted RBP	28.02	■■■□□ 2.08
NME3-208	ENST00000565379	SMTNL1	A8MU46	457 aa		28.01	■■■□□ 2.07
NME3-208	ENST00000565379	STX10	O60499	249 aa		28.01	■■■□□ 2.07
NME3-208	ENST00000565379	NFIC	P08651	508 aa		28.01	■■■□□ 2.07
NME3-208	ENST00000565379	TNNI1	P19237	187 aa		28.01	■■■□□ 2.07
NME3-208	ENST00000565379	CCDC40	Q4G0X9	1142 aa		28.01	■■■□□ 2.07
NME3-208	ENST00000565379	SYCE2	Q6PIF2	218 aa		28.01	■■■□□ 2.07
NME3-208	ENST00000565379	LRSAM1	Q6UWE0	723 aa		28.01	■■■□□ 2.07
NME3-208	ENST00000565379	MRPL43	Q8N983	215 aa	Known RBP	28.01	■■■□□ 2.07
NME3-208	ENST00000565379	BORCS6	Q96GS4	357 aa		28.01	■■■□□ 2.07
NME3-208	ENST00000565379	CDCA3	Q99618	268 aa	Predicted RBP	28.01	■■■□□ 2.07
NME3-208	ENST00000565379	CXCL16	Q9H2A7	254 aa		28.01	■■■□□ 2.07
NME3-208	ENST00000565379	MUC6	Q6W4X9	2439 aa		28	■■■□□ 2.07
NME3-208	ENST00000565379		F8W810	466 aa		28	■■■□□ 2.07
NME3-208	ENST00000565379	TNNC2	P02585	160 aa		28	■■■□□ 2.07
NME3-208	ENST00000565379	DLAT	P10515	647 aa	Known RBP	28	■■■□□ 2.07
NME3-208	ENST00000565379	LRPAP1	P30533	357 aa		28	■■■□□ 2.07
NME3-208	ENST00000565379	ZNF165	P49910	485 aa		28	■■■□□ 2.07
NME3-208	ENST00000565379	SMC1A	Q14683	1233 aa	Known RBP	28	■■■□□ 2.07
NME3-208	ENST00000565379	FEZF2	Q8TBJ5	459 aa		28	■■■□□ 2.07
NME3-208	ENST00000565379	EEF2KMT	Q96G04	330 aa		28	■■■□□ 2.07
NME3-208	ENST00000565379	GZF1	Q9H116	711 aa	Predicted RBP	28	■■■□□ 2.07
NME3-208	ENST00000565379	INTS13	Q9NVM9	706 aa		28	■■■□□ 2.07
NME3-208	ENST00000565379	NFE2L3	Q9Y4A8	694 aa		28	■■■□□ 2.07
NME3-208	ENST00000565379	CLASP2	O75122	1294 aa	Known RBP	27.99	■■■□□ 2.07
NME3-208	ENST00000565379	CXCL14	O95715	111 aa		27.99	■■■□□ 2.07
NME3-208	ENST00000565379	TMEM191B	P0C7N4	346 aa		27.99	■■■□□ 2.07
NME3-208	ENST00000565379	PAX3	P23760	479 aa		27.99	■■■□□ 2.07
NME3-208	ENST00000565379	GTF2H1	P32780	548 aa		27.99	■■■□□ 2.07
NME3-208	ENST00000565379	ZNF445	P59923	1031 aa		27.99	■■■□□ 2.07
NME3-208	ENST00000565379	TFAM	Q00059	246 aa	Known RBP	27.99	■■■□□ 2.07
NME3-208	ENST00000565379	ANKRD54	Q6NXT1	300 aa		27.99	■■■□□ 2.07
NME3-208	ENST00000565379	EFCAB13	Q8IY85	973 aa		27.99	■■■□□ 2.07
NME3-208	ENST00000565379	COLEC11	Q9BWP8	271 aa		27.99	■■■□□ 2.07
NME3-208	ENST00000565379	MAGEC2	Q9UBF1	373 aa	Predicted RBP	27.99	■■■□□ 2.07
NME3-208	ENST00000565379	STK39	Q9UEW8	545 aa		27.99	■■■□□ 2.07
NME3-208	ENST00000565379	FAN1	Q9Y2M0	1017 aa		27.99	■■■□□ 2.07
NME3-208	ENST00000565379	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	27.98	■■■□□ 2.07
NME3-208	ENST00000565379	TULP1	O00294	542 aa	Predicted RBP	27.98	■■■□□ 2.07
NME3-208	ENST00000565379	WNT7B	P56706	349 aa		27.98	■■■□□ 2.07
NME3-208	ENST00000565379	SPAG1	Q07617	926 aa		27.98	■■■□□ 2.07
NME3-208	ENST00000565379	DDX53	Q86TM3	631 aa	Known RBP	27.98	■■■□□ 2.07
NME3-208	ENST00000565379	S1PR5	Q9H228	398 aa		27.98	■■■□□ 2.07
NME3-208	ENST00000565379	MARCH5	Q9NX47	278 aa		27.98	■■■□□ 2.07
NME3-208	ENST00000565379	DPP3	Q9NY33	737 aa		27.98	■■■□□ 2.07
NME3-208	ENST00000565379	ITGA11	Q9UKX5	1188 aa		27.98	■■■□□ 2.07
NME3-208	ENST00000565379	PRG3	Q9Y2Y8	225 aa	Predicted RBP	27.98	■■■□□ 2.07
NME3-208	ENST00000565379	HCFC2	Q9Y5Z7	792 aa		27.98	■■■□□ 2.07
NME3-208	ENST00000565379	LRRIQ3	A6PVS8	624 aa	Predicted RBP	27.97	■■■□□ 2.07
NME3-208	ENST00000565379	PRKCSH	P14314	528 aa	Predicted RBP	27.97	■■■□□ 2.07
NME3-208	ENST00000565379	OR1G1	P47890	313 aa		27.97	■■■□□ 2.07
NME3-208	ENST00000565379	DCLRE1A	Q6PJP8	1040 aa		27.97	■■■□□ 2.07
NME3-208	ENST00000565379	TMEM184A	Q6ZMB5	413 aa		27.97	■■■□□ 2.07
NME3-208	ENST00000565379	SUSD6	Q92537	303 aa		27.97	■■■□□ 2.07
NME3-208	ENST00000565379	C18orf25	Q96B23	403 aa	Predicted RBP	27.97	■■■□□ 2.07
NME3-208	ENST00000565379	R3HCC1	Q9Y3T6	440 aa	Known RBP	27.97	■■■□□ 2.07
NME3-208	ENST00000565379	TDRD15	B5MCY1	1934 aa	Known RBP	27.96	■■■□□ 2.07
NME3-208	ENST00000565379	TMEM189-UBE2V1	I3L0A0	370 aa		27.96	■■■□□ 2.07
NME3-208	ENST00000565379	NRP1	O14786	923 aa		27.96	■■■□□ 2.07
NME3-208	ENST00000565379	SOX4	Q06945	474 aa	Predicted RBP	27.96	■■■□□ 2.07
NME3-208	ENST00000565379	UPP1	Q16831	310 aa		27.96	■■■□□ 2.07
NME3-208	ENST00000565379	PLEKHO2	Q8TD55	490 aa		27.96	■■■□□ 2.07
NME3-208	ENST00000565379	TSPY26P	Q9H489	355 aa		27.96	■■■□□ 2.07
NME3-208	ENST00000565379	CACNG4	Q9UBN1	327 aa		27.96	■■■□□ 2.07
NME3-208	ENST00000565379	TUBGCP4	Q9UGJ1	667 aa		27.96	■■■□□ 2.07
NME3-208	ENST00000565379	CASTOR2	A6NHX0	329 aa		27.95	■■■□□ 2.06
NME3-208	ENST00000565379	BECN2	A8MW95	431 aa		27.95	■■■□□ 2.06
NME3-208	ENST00000565379	PODXL	O00592	558 aa		27.95	■■■□□ 2.06
NME3-208	ENST00000565379	CTSA	P10619	480 aa		27.95	■■■□□ 2.06
NME3-208	ENST00000565379	EEF1G	P26641	437 aa	Known RBP	27.95	■■■□□ 2.06
NME3-208	ENST00000565379	TAS1R1	Q7RTX1	841 aa		27.95	■■■□□ 2.06
NME3-208	ENST00000565379	CNOT6L	Q96LI5	555 aa	Known RBP	27.95	■■■□□ 2.06
NME3-208	ENST00000565379	MTMR12	Q9C0I1	747 aa		27.95	■■■□□ 2.06
NME3-208	ENST00000565379	MUTYH	Q9UIF7	546 aa		27.95	■■■□□ 2.06
NME3-208	ENST00000565379	ANK1	P16157	1881 aa		27.94	■■■□□ 2.06
NME3-208	ENST00000565379	TRIP11	Q15643	1979 aa		27.94	■■■□□ 2.06
NME3-208	ENST00000565379	EPCAM	P16422	314 aa		27.94	■■■□□ 2.06
NME3-208	ENST00000565379	PNPLA4	P41247	253 aa		27.94	■■■□□ 2.06
NME3-208	ENST00000565379	CLCNKB	P51801	687 aa		27.94	■■■□□ 2.06
NME3-208	ENST00000565379	RBP5	P82980	135 aa		27.94	■■■□□ 2.06
NME3-208	ENST00000565379	PTPN14	Q15678	1187 aa		27.94	■■■□□ 2.06
NME3-208	ENST00000565379	RNF135	Q8IUD6	432 aa		27.94	■■■□□ 2.06
NME3-208	ENST00000565379	TRIM59	Q8IWR1	403 aa		27.94	■■■□□ 2.06
NME3-208	ENST00000565379	AOPEP	Q8N6M6	819 aa		27.94	■■■□□ 2.06
NME3-208	ENST00000565379	C12orf76	Q8N812	135 aa	Predicted RBP	27.94	■■■□□ 2.06
NME3-208	ENST00000565379	RABGGTA	Q92696	567 aa		27.94	■■■□□ 2.06
NME3-208	ENST00000565379	TMEM8A	Q9HCN3	771 aa		27.94	■■■□□ 2.06
NME3-208	ENST00000565379	PDCD11	Q14690	1871 aa	Known RBP	27.93	■■■□□ 2.06
NME3-208	ENST00000565379	ANO9	A1A5B4	782 aa		27.93	■■■□□ 2.06
NME3-208	ENST00000565379	WEE2	P0C1S8	567 aa		27.93	■■■□□ 2.06
NME3-208	ENST00000565379	TPM4	P67936	248 aa		27.93	■■■□□ 2.06
NME3-208	ENST00000565379	DLG4	P78352	724 aa		27.93	■■■□□ 2.06
NME3-208	ENST00000565379	DCAF17	Q5H9S7	520 aa	Predicted RBP	27.93	■■■□□ 2.06
NME3-208	ENST00000565379	TCERG1L	Q5VWI1	586 aa		27.93	■■■□□ 2.06
NME3-208	ENST00000565379	C9orf57	Q5W0N0	161 aa		27.93	■■■□□ 2.06
NME3-208	ENST00000565379	TRAPPC11	Q7Z392	1133 aa		27.93	■■■□□ 2.06
NME3-208	ENST00000565379	IRF2BP1	Q8IU81	584 aa		27.93	■■■□□ 2.06
NME3-208	ENST00000565379	C1orf127	Q8N9H9	656 aa		27.93	■■■□□ 2.06
NME3-208	ENST00000565379	ANKRD20A12P	Q8NF67	263 aa		27.93	■■■□□ 2.06

Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms