RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TICRRQ7Z2Z1 1910 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 ABLIM3O94929 683 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 LRG1P02750 347 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 ATXN1P54253 815 aaKnown RBP20.68■□□□□ 0.9
VPS35-202ENST00000561713 FAM78AQ5JUQ0 283 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 PRSS36Q5K4E3 855 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 FAM173BQ6P4H8 233 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 USP49Q70CQ1 688 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 ZNF687Q8N1G0 1237 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 MYCT1Q8N699 235 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 GPR161Q8N6U8 529 aaKnown RBP20.68■□□□□ 0.9
VPS35-202ENST00000561713 RAD54LQ92698 747 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 SECISBP2LQ93073 1101 aaKnown RBP20.68■□□□□ 0.9
VPS35-202ENST00000561713 KIF12Q96FN5 646 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 CNTNAP3BQ96NU0 1288 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 CNTNAP3Q9BZ76 1288 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 FBXL5Q9UKA1 691 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 ODF2LQ9ULJ1 636 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 NDRG2Q9UN36 371 aaKnown RBP20.68■□□□□ 0.9
VPS35-202ENST00000561713 MRPS17Q9Y2R5 130 aaKnown RBP20.68■□□□□ 0.9
VPS35-202ENST00000561713 CLIC4Q9Y696 253 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 EPG5Q9HCE0 2579 aa20.68■□□□□ 0.9
VPS35-202ENST00000561713 TISP43B9A030 160 aa20.67■□□□□ 0.9
VPS35-202ENST00000561713 PRRG1O14668 218 aa20.67■□□□□ 0.9
VPS35-202ENST00000561713 PPEF2O14830 753 aa20.67■□□□□ 0.9
VPS35-202ENST00000561713 SEC24AO95486 1093 aa20.67■□□□□ 0.9
VPS35-202ENST00000561713 NMT1P30419 496 aaKnown RBP20.67■□□□□ 0.9
VPS35-202ENST00000561713 ELF1P32519 619 aa20.67■□□□□ 0.9
VPS35-202ENST00000561713 CTXN3Q4LDR2 81 aa20.67■□□□□ 0.9
VPS35-202ENST00000561713 SLC39A4Q6P5W5 647 aa20.67■□□□□ 0.9
VPS35-202ENST00000561713 SUSD3Q96L08 255 aa20.67■□□□□ 0.9
VPS35-202ENST00000561713 IKZF4Q9H2S9 585 aa20.67■□□□□ 0.9
VPS35-202ENST00000561713 PARVGQ9HBI0 331 aa20.67■□□□□ 0.9
VPS35-202ENST00000561713 FOXD4L1Q9NU39 408 aa20.67■□□□□ 0.9
VPS35-202ENST00000561713 TBX20Q9UMR3 447 aa20.67■□□□□ 0.9
VPS35-202ENST00000561713 TIMM13Q9Y5L4 95 aaPredicted RBP20.67■□□□□ 0.9
VPS35-202ENST00000561713 COL4A2P08572 1712 aa20.67■□□□□ 0.9
VPS35-202ENST00000561713 SYN3O14994 580 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 FAM189A1O60320 539 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 TBCAO75347 108 aaKnown RBP20.66■□□□□ 0.9
VPS35-202ENST00000561713 TGM1P22735 817 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 MARCKSP29966 332 aaPredicted RBP20.66■□□□□ 0.9
VPS35-202ENST00000561713 RPL9P32969 192 aaKnown RBP20.66■□□□□ 0.9
VPS35-202ENST00000561713 LONP1P36776 959 aaKnown RBP20.66■□□□□ 0.9
VPS35-202ENST00000561713 CCR2P41597 374 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 PPP2R3AQ06190 1150 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 CUL4AQ13619 759 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 ENOX2Q16206 610 aaKnown RBP20.66■□□□□ 0.9
VPS35-202ENST00000561713 ZNF280DQ6N043 979 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 DDX12PQ92771 950 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 DNASE1L2Q92874 299 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 EPSTI1Q96J88 318 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 BRD9Q9H8M2 597 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 CYP4F11Q9HBI6 524 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 SPTBN2O15020 2390 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 ZFHX4Q86UP3 3567 aa20.66■□□□□ 0.9
VPS35-202ENST00000561713 TTC26A0AVF1 554 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 LACTBL1A8MY62 500 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 TBC1D4O60343 1298 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 BMP15O95972 392 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 CLTAP09496 248 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 TDGF1P13385 188 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 ATF2P15336 505 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 SDHBP21912 280 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 ZNF131P52739 623 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 CEBPZQ03701 1054 aaKnown RBP20.65■□□□□ 0.9
VPS35-202ENST00000561713 RESTQ13127 1097 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 TCEAL8Q8IYN2 117 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 KCTD17Q8N5Z5 321 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 LARP4BQ92615 738 aaKnown RBP20.65■□□□□ 0.9
VPS35-202ENST00000561713 FAM212AQ96EL1 285 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 ZSWIM3Q96MP5 696 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 FIZ1Q96SL8 496 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 TRMT61BQ9BVS5 477 aaKnown RBP20.65■□□□□ 0.9
VPS35-202ENST00000561713 ZFP14Q9HCL3 533 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 PARD6AQ9NPB6 346 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 USP18Q9UMW8 372 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 INSL5Q9Y5Q6 135 aa20.65■□□□□ 0.9
VPS35-202ENST00000561713 PRR5-ARHGAP8B1AHC4 643 aa20.64■□□□□ 0.89
VPS35-202ENST00000561713 H0YCG3 227 aa20.64■□□□□ 0.89
VPS35-202ENST00000561713 OR4Q2P0C623 313 aa20.64■□□□□ 0.89
VPS35-202ENST00000561713 CPB1P15086 417 aa20.64■□□□□ 0.89
VPS35-202ENST00000561713 ARHGAP8P85298 464 aa20.64■□□□□ 0.89
VPS35-202ENST00000561713 LMNB2Q03252 620 aa20.64■□□□□ 0.89
VPS35-202ENST00000561713 PTPAQ15257 358 aa20.64■□□□□ 0.89
VPS35-202ENST00000561713 ZC2HC1CQ53FD0 456 aaPredicted RBP20.64■□□□□ 0.89
VPS35-202ENST00000561713 PDZD4Q76G19 769 aaPredicted RBP20.64■□□□□ 0.89
VPS35-202ENST00000561713 ASB16Q96NS5 453 aa20.64■□□□□ 0.89
VPS35-202ENST00000561713 CLIC6Q96NY7 704 aa20.64■□□□□ 0.89
VPS35-202ENST00000561713 MSTO1Q9BUK6 570 aa20.64■□□□□ 0.89
VPS35-202ENST00000561713 FAM126AQ9BYI3 521 aaPredicted RBP20.64■□□□□ 0.89
VPS35-202ENST00000561713 CDV3Q9UKY7 258 aaKnown RBP20.64■□□□□ 0.89
VPS35-202ENST00000561713 PCDHB8Q9UN66 801 aa20.64■□□□□ 0.89
VPS35-202ENST00000561713 KMT2BQ9UMN6 2715 aaPredicted RBP20.64■□□□□ 0.89
VPS35-202ENST00000561713 DCDC2BA2VCK2 349 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 H7C4K7 107 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 MAN2B1O00754 1011 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 OGTO15294 1046 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 SLC26A4O43511 780 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 TRAK2O60296 914 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms