RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	YTHDF3	Q7Z739	585 aa	Known RBP	3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	HOMER1	Q86YM7	354 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	ADGRG5	Q8IZF4	528 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	DNAJC2	Q99543	621 aa	Known RBP	3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	ADI1	Q9BV57	179 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	TLR10	Q9BXR5	811 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	ANLN	Q9NQW6	1124 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	KLC4	Q9NSK0	619 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	CTTNBP2NL	Q9P2B4	639 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	TARM1	B6A8C7	271 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435		H3BNC9	293 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	KIAA0391	O15091	583 aa	Known RBP	3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	INSIG1	O15503	277 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	ULK1	O75385	1050 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	HAUS5	O94927	633 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	TTLL1	O95922	423 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	PPP3CB	P16298	524 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	BPI	P17213	487 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	DRD4	P21917	467 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	ANXA11	P50995	505 aa	Known RBP	3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	POLG	P54098	1239 aa	Predicted RBP	3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	MGAT2	Q10469	447 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	MALL	Q13021	153 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	LAMB3	Q13751	1172 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	CD300E	Q496F6	205 aa	Predicted RBP	3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	C16orf86	Q6ZW13	317 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	KCNK18	Q7Z418	384 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	DHX37	Q8IY37	1157 aa	Known RBP	3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	CLRN3	Q8NCR9	226 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	PBK	Q96KB5	322 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	QRSL1	Q9H0R6	528 aa	Known RBP	3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	VSX1	Q9NZR4	365 aa	Predicted RBP	3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	ZBTB21	Q9ULJ3	1066 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	CDYL	Q9Y232	598 aa		3.97	□□□□□ -1.77
SPG11-222	ENST00000560435	FAM171A2	A8MVW0	826 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	VWC2L	B2RUY7	222 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	TOP3B	O95985	862 aa	Known RBP	3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	AMY1A	P04745	511 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	HNRNPC	P07910	306 aa	Known RBP eCLIP	3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	MPG	P29372	298 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	ATP8B2	P98198	1209 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	CREM	Q03060	361 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	ZNF844	Q08AG5	666 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	ATP2B3	Q16720	1220 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	PREPL	Q4J6C6	727 aa	Predicted RBP	3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	SLC18B1	Q6NT16	456 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	B3GALNT2	Q8NCR0	500 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	CCHCR1	Q8TD31	782 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	SNX19	Q92543	992 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	ORAI2	Q96SN7	254 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	ELOVL5	Q9NYP7	299 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	PCDHB1	Q9Y5F3	818 aa		3.96	□□□□□ -1.78
SPG11-222	ENST00000560435	ADGRA2	Q96PE1	1338 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	PPP6C	O00743	305 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	NEMP1	O14524	444 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	SUN1	O94901	812 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	DDC	P20711	480 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	SLC6A4	P31645	630 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	CCT8	P50990	548 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	HNRNPM	P52272	730 aa	Known RBP eCLIP	3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	HLX	Q14774	488 aa	Predicted RBP	3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	PROSER3	Q2NL68	480 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	SUPT20HL1	Q3ZLR7	823 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	HOMEZ	Q8IX15	550 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	SAMD14	Q8IZD0	417 aa	Predicted RBP	3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	ZGPAT	Q8N5A5	531 aa	Known RBP	3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	CAMKK1	Q8N5S9	505 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	MFSD3	Q96ES6	412 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	HMCES	Q96FZ2	354 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	C11orf54	Q9H0W9	315 aa	Predicted RBP	3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	MANSC1	Q9H8J5	431 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	PLAA	Q9Y263	795 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	LRP12	Q9Y561	859 aa		3.95	□□□□□ -1.78
SPG11-222	ENST00000560435	CCDC195	A0A1B0GUA6	201 aa		3.94	□□□□□ -1.78
SPG11-222	ENST00000560435		E7ENX8	843 aa		3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	AGFG2	O95081	481 aa		3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	SNHG28	P0DPA3	235 aa		3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	GSPT1	P15170	499 aa	Known RBP	3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	NR4A2	P43354	598 aa		3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	TAP2	Q03519	686 aa		3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	TMPRSS9	Q7Z410	1059 aa		3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	KRT73	Q86Y46	540 aa		3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	LEO1	Q8WVC0	666 aa	Predicted RBP	3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	LMBR1	Q8WVP7	490 aa		3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	APPBP2	Q92624	585 aa		3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	USP7	Q93009	1102 aa		3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	RNPC3	Q96LT9	517 aa	Known RBP	3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	ALG8	Q9BVK2	526 aa		3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	QTRT1	Q9BXR0	403 aa	Known RBP	3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	MTMR4	Q9NYA4	1195 aa		3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	MYBBP1A	Q9BQG0	1328 aa	Known RBP	3.94	□□□□□ -1.78
SPG11-222	ENST00000560435	TOR1B	O14657	336 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	TUBB4A	P04350	444 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	EBLN1	P0CF75	366 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	NR2F6	P10588	404 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	MMP13	P45452	471 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	CTXN1	P60606	82 aa		3.93	□□□□□ -1.78
SPG11-222	ENST00000560435	MC2R	Q01718	297 aa		3.93	□□□□□ -1.78

Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms