RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 CT47A1Q5JQC4 288 aaPredicted RBP14.02□□□□□ -0.17
NEDD8-208ENST00000560427 VARS2Q5ST30 1063 aaKnown RBP14.02□□□□□ -0.17
NEDD8-208ENST00000560427 ANKRD40Q6AI12 368 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 ISM2Q6H9L7 571 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 ZNF280DQ6N043 979 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 DSTYKQ6XUX3 929 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 RBM43Q6ZSC3 357 aaKnown RBP14.02□□□□□ -0.17
NEDD8-208ENST00000560427 TRAPPC11Q7Z392 1133 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 CSGALNACT2Q8N6G5 542 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 OR5B17Q8NGF7 314 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 SPATA18Q8TC71 538 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 HDAC7Q8WUI4 952 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 ATXN2LQ8WWM7 1075 aaKnown RBP14.02□□□□□ -0.17
NEDD8-208ENST00000560427 NELFBQ8WX92 580 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 B3GALT6Q96L58 329 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 GZF1Q9H116 711 aaPredicted RBP14.02□□□□□ -0.17
NEDD8-208ENST00000560427 IGFLR1Q9H665 355 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 CLDND1Q9NY35 253 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 AGAP1Q9UPQ3 857 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 HCFC2Q9Y5Z7 792 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 LRRIQ3A6PVS8 624 aaPredicted RBP14.01□□□□□ -0.17
NEDD8-208ENST00000560427 KPNA7A9QM74 516 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 I3L4J1 428 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 PPEF2O14830 753 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 STX10O60499 249 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 OAZ2O95190 189 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 STAU1O95793 577 aaKnown RBP14.01□□□□□ -0.17
NEDD8-208ENST00000560427 GLUD1P00367 558 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 CYP11A1P05108 521 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 KRT19P08727 400 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 HOXB8P17481 243 aaPredicted RBP14.01□□□□□ -0.17
NEDD8-208ENST00000560427 IGFBP6P24592 240 aaPredicted RBP14.01□□□□□ -0.17
NEDD8-208ENST00000560427 KLRC2P26717 231 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 GTF2H1P32780 548 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 GTF2F1P35269 517 aaKnown RBP eCLIP14.01□□□□□ -0.17
NEDD8-208ENST00000560427 VAMP7P51809 220 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 PMS1P54277 932 aaKnown RBP14.01□□□□□ -0.17
NEDD8-208ENST00000560427 YWHAHQ04917 246 aaPredicted RBP14.01□□□□□ -0.17
NEDD8-208ENST00000560427 MRPL58Q14197 206 aaKnown RBP14.01□□□□□ -0.17
NEDD8-208ENST00000560427 PUS10Q3MIT2 529 aaKnown RBP14.01□□□□□ -0.17
NEDD8-208ENST00000560427 CCDC183Q5T5S1 534 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 LMBRD2Q68DH5 695 aaPredicted RBP14.01□□□□□ -0.17
NEDD8-208ENST00000560427 SLC8B1Q6J4K2 584 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 KLHL10Q6JEL2 608 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 TTI2Q6NXR4 508 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 PLEKHO2Q8TD55 490 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 SLC22A17Q8WUG5 538 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 SYAP1Q96A49 352 aaPredicted RBP14.01□□□□□ -0.17
NEDD8-208ENST00000560427 SENP8Q96LD8 212 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 METTL14Q9HCE5 456 aaKnown RBP14.01□□□□□ -0.17
NEDD8-208ENST00000560427 GDAP2Q9NXN4 497 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 SIX4Q9UIU6 781 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 RWDD2AQ9UIY3 292 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 CTNND2Q9UQB3 1225 aa14.01□□□□□ -0.17
NEDD8-208ENST00000560427 TRIM49BA6NDI0 452 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 TULP1O00294 542 aaPredicted RBP14□□□□□ -0.17
NEDD8-208ENST00000560427 SPTLC1O15269 473 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 TBX10O75333 385 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 FGFR1OPO95684 399 aaKnown RBP14□□□□□ -0.17
NEDD8-208ENST00000560427 GNA14O95837 355 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 GLP2RO95838 553 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 ATICP31939 592 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 TRPC3Q13507 836 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 RAB33AQ14088 237 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 LEXMQ3ZCV2 418 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 ZACNQ401N2 412 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 PRSS55Q6UWB4 352 aaPredicted RBP14□□□□□ -0.17
NEDD8-208ENST00000560427 DPH6Q7L8W6 267 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 FILIP1Q7Z7B0 1213 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 VN1R2Q8NFZ6 395 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 BORCS6Q96GS4 357 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 POP1Q99575 1024 aaKnown RBP14□□□□□ -0.17
NEDD8-208ENST00000560427 PLEKHA4Q9H4M7 779 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 MAFFQ9ULX9 164 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 FAM50BQ9Y247 325 aa14□□□□□ -0.17
NEDD8-208ENST00000560427 MYO7AQ13402 2215 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 OR6C75A6NL08 312 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 LINC01565O15544 149 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 TBC1D4O60343 1298 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 HUS1O60921 280 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 PHACTR2O75167 634 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 KCNA5P22460 613 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 ERCC5P28715 1186 aaPredicted RBP13.99□□□□□ -0.17
NEDD8-208ENST00000560427 LTBRP36941 435 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 NLRP12P59046 1061 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 MRPS5P82675 430 aaKnown RBP13.99□□□□□ -0.17
NEDD8-208ENST00000560427 BIRC3Q13489 604 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 CTXN3Q4LDR2 81 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 OVOS1Q6IE37 1185 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 ANKRD54Q6NXT1 300 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 RTL10Q7L3V2 364 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 METTL23Q86XA0 190 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.99□□□□□ -0.17
NEDD8-208ENST00000560427 TMEM86AQ8N2M4 240 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 TOP6BLQ8N6T0 577 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 HPDLQ96IR7 371 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 MSLNLQ96KJ4 702 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 DUSP9Q99956 384 aaKnown RBP13.99□□□□□ -0.17
NEDD8-208ENST00000560427 CLSTN3Q9BQT9 956 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 VRTNQ9H8Y1 702 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms