RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 TRIP11Q15643 1979 aa6.91□□□□□ -1.3
SPG11-221ENST00000560299 ANK1P16157 1881 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 SSU72P8A0A1W2PR75 194 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 ARHGEF37A1IGU5 675 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 LRRC53A6NM62 1247 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 C9IYK1 514 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 EPHB6O15197 1021 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 ZSCAN12O43309 604 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 NBNO60934 754 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 VNN1O95497 513 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 STAU1O95793 577 aaKnown RBP6.9□□□□□ -1.3
SPG11-221ENST00000560299 CST3P01034 146 aaPredicted RBP6.9□□□□□ -1.3
SPG11-221ENST00000560299 ITGB3P05106 788 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 POU3F3P20264 500 aaPredicted RBP6.9□□□□□ -1.3
SPG11-221ENST00000560299 ANXA13P27216 316 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 POLR2BP30876 1174 aaKnown RBP6.9□□□□□ -1.3
SPG11-221ENST00000560299 RPL9P32969 192 aaKnown RBP6.9□□□□□ -1.3
SPG11-221ENST00000560299 SOX5P35711 763 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 USP8P40818 1118 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 KCNJ6P48051 423 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 CCL23P55773 120 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 WNT7BP56706 349 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 MYL6P60660 151 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 TNNC1P63316 161 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 KRT83P78385 493 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 FAM189BP81408 668 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 KLHL30Q0D2K2 578 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 MBTPS1Q14703 1052 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 SPA17Q15506 151 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 RAB30Q15771 203 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 ZBTB6Q15916 424 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 MEA1Q16626 185 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 ARHGAP44Q17R89 818 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 TDRD12Q587J7 1177 aaKnown RBP6.9□□□□□ -1.3
SPG11-221ENST00000560299 IQCEQ6IPM2 695 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 PHLDB3Q6NSJ2 640 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 ZSCAN30Q86W11 494 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 LRRC52Q8N7C0 313 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 C1orf127Q8N9H9 656 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 DBF4BQ8NFT6 615 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 URGCPQ8TCY9 931 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 HELQQ8TDG4 1101 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 BAP1Q92560 729 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 DDX27Q96GQ7 796 aaKnown RBP6.9□□□□□ -1.3
SPG11-221ENST00000560299 HPDLQ96IR7 371 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 ZNF830Q96NB3 372 aaPredicted RBP6.9□□□□□ -1.3
SPG11-221ENST00000560299 FAM193BQ96PV7 902 aaPredicted RBP6.9□□□□□ -1.3
SPG11-221ENST00000560299 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.9□□□□□ -1.3
SPG11-221ENST00000560299 NIF3L1Q9GZT8 377 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 TMX1Q9H3N1 280 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 VRTNQ9H8Y1 702 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 CYP3A43Q9HB55 503 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 TMEM161AQ9NX61 479 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 KLK14Q9P0G3 267 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 PCDHA11Q9Y5I1 949 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.9□□□□□ -1.3
SPG11-221ENST00000560299 PTPRJQ12913 1337 aa6.9□□□□□ -1.3
SPG11-221ENST00000560299 RALGAPA2Q2PPJ7 1873 aa6.9□□□□□ -1.31
SPG11-221ENST00000560299 GOLGA6L9A6NEM1 432 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 ARL5CA6NH57 179 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 F8VZ95 297 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 RNF225M0QZC1 329 aaPredicted RBP6.89□□□□□ -1.31
SPG11-221ENST00000560299 FOXN3O00409 490 aaPredicted RBP6.89□□□□□ -1.31
SPG11-221ENST00000560299 ENPP3O14638 875 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 AKR1B10O60218 316 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 MGEA5O60502 916 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 GFPT2O94808 682 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 SYN1P17600 705 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 IBSPP21815 317 aaPredicted RBP6.89□□□□□ -1.31
SPG11-221ENST00000560299 FECHP22830 423 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 LRPAP1P30533 357 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 MLH1P40692 756 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 EPHB4P54760 987 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 JAM2P57087 298 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 HTRA4P83105 476 aaPredicted RBP6.89□□□□□ -1.31
SPG11-221ENST00000560299 CCZ1BP86790 482 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 CCZ1P86791 482 aaPredicted RBP6.89□□□□□ -1.31
SPG11-221ENST00000560299 ARID5AQ03989 594 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 PTK2Q05397 1052 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 RNASELQ05823 741 aaKnown RBP6.89□□□□□ -1.31
SPG11-221ENST00000560299 GOLGA8FQ08AF8 430 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 GOLGA8DPQ0D2H9 430 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 GRIK3Q13003 919 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 CUL2Q13617 745 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 SHHQ15465 462 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 WDR72Q3MJ13 1102 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 SV2CQ496J9 727 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 GLRA4Q5JXX5 417 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 C9orf57Q5W0N0 161 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 DPY19L2P1Q6NXN4 242 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 AGMOQ6ZNB7 445 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 ZNF365Q70YC5 407 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 DEFB128Q7Z7B8 93 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 ZNF598Q86UK7 904 aaKnown RBP6.89□□□□□ -1.31
SPG11-221ENST00000560299 ARHGEF19Q8IW93 802 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 SHC3Q92529 594 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 TATDN2Q93075 761 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 TOP1MTQ969P6 601 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 SCLYQ96I15 445 aa6.89□□□□□ -1.31
SPG11-221ENST00000560299 UROC1Q96N76 676 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms