RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 POLR2MP0CAP2 368 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 ANXA13P27216 316 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 GCLCP48506 637 aaPredicted RBP11.98□□□□□ -0.49
LDLR-208ENST00000558518 ATXN3P54252 364 aaPredicted RBP11.98□□□□□ -0.49
LDLR-208ENST00000558518 ALDH18A1P54886 795 aaKnown RBP11.98□□□□□ -0.49
LDLR-208ENST00000558518 SLC10A5Q5PT55 438 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 C3orf62Q6ZUJ4 267 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 PPP1R14CQ8TAE6 165 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 OLIG1Q8TAK6 271 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 C8orf37Q96NL8 207 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 TMX4Q9H1E5 349 aaPredicted RBP11.98□□□□□ -0.49
LDLR-208ENST00000558518 CCDC134Q9H6E4 229 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 TDRD3Q9H7E2 651 aaKnown RBP11.98□□□□□ -0.49
LDLR-208ENST00000558518 NENFQ9UMX5 172 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 PCDHB4Q9Y5E5 795 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 ROBO3Q96MS0 1386 aa11.98□□□□□ -0.49
LDLR-208ENST00000558518 TCP10L2B9ZVM9 353 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 GGPS1O95749 300 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 FGFR1P11362 822 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 BGNP21810 368 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 ACOT2P49753 483 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 USP4Q13107 963 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 CCDC33Q8N5R6 958 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 SLC7A6OSQ96CW6 309 aaPredicted RBP11.97□□□□□ -0.49
LDLR-208ENST00000558518 FNBP1Q96RU3 617 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 TEKT3Q9BXF9 490 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 CADM1Q9BY67 442 aaKnown RBP11.97□□□□□ -0.49
LDLR-208ENST00000558518 TRIM55Q9BYV6 548 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 ZNF395Q9H8N7 513 aaPredicted RBP11.97□□□□□ -0.49
LDLR-208ENST00000558518 C1orf112Q9NSG2 853 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 RAB20Q9NX57 234 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 PRKAG3Q9UGI9 489 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 PACSIN3Q9UKS6 424 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 PRR12Q9ULL5 1215 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 T-ENOLP0DO92 83 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 SNHG28P0DPA3 235 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 ALADP13716 330 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 EIF2AK2P19525 551 aaKnown RBP11.97□□□□□ -0.49
LDLR-208ENST00000558518 ATP2B4P23634 1241 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 VHLP40337 213 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 NEK3P51956 506 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 MKRN3Q13064 507 aaKnown RBP11.97□□□□□ -0.49
LDLR-208ENST00000558518 ALCAMQ13740 583 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 LAMB3Q13751 1172 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 ACSBG2Q5FVE4 666 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 TRABD2AQ86V40 505 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 USP6NLQ92738 828 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 LRMDAQ9H2I8 198 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 LRRC19Q9H756 370 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 ANKFY1Q9P2R3 1169 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 PCSK1NQ9UHG2 260 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 ADAMTSL3P82987 1691 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 FAM237BA0A1B0GVD1 139 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 TESPA1A2RU30 521 aaPredicted RBP11.97□□□□□ -0.49
LDLR-208ENST00000558518 BHMG1C9JSJ3 638 aaPredicted RBP11.97□□□□□ -0.49
LDLR-208ENST00000558518 PIK3R2O00459 728 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 SREBF1P36956 1147 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 PLEKHG4Q58EX7 1191 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 TMEM63BQ5T3F8 832 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 ALYREFQ86V81 257 aaKnown RBP11.97□□□□□ -0.49
LDLR-208ENST00000558518 RBBP8NLQ8NC74 664 aaPredicted RBP11.97□□□□□ -0.49
LDLR-208ENST00000558518 ACER1Q8TDN7 264 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 CFAP36Q96G28 342 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 MIPEPQ99797 713 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 HSD17B14Q9BPX1 270 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 MECRQ9BV79 373 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 TSSK1BQ9BXA7 367 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 WDR11Q9BZH6 1224 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 DCLRE1BQ9H816 532 aa11.97□□□□□ -0.49
LDLR-208ENST00000558518 ZBTB12Q9Y330 459 aaPredicted RBP11.97□□□□□ -0.49
LDLR-208ENST00000558518 ROBO1Q9Y6N7 1651 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 DENND3A2RUS2 1198 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 KIF3CO14782 793 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 TBX10O75333 385 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 FOSP01100 380 aaPredicted RBP11.96□□□□□ -0.49
LDLR-208ENST00000558518 MT-ND3P03897 115 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 PYGLP06737 847 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 MYL2P10916 166 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 AMPD1P23109 780 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 PTPN4P29074 926 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 NR1H3Q13133 447 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 SPDYCQ5MJ68 293 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 ACAD10Q6JQN1 1059 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 PRR5LQ6MZQ0 368 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 SCARA5Q6ZMJ2 495 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 LRRC74BQ6ZQY2 392 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 ANKS1BQ7Z6G8 1248 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 CLNKQ7Z7G1 428 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.96□□□□□ -0.49
LDLR-208ENST00000558518 GRAMD1AQ96CP6 724 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 GLT8D2Q9H1C3 349 aa11.96□□□□□ -0.49
LDLR-208ENST00000558518 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.96□□□□□ -0.5
LDLR-208ENST00000558518 EIF3DO15371 548 aaKnown RBP eCLIP11.96□□□□□ -0.5
LDLR-208ENST00000558518 EDF1O60869 148 aaKnown RBP11.96□□□□□ -0.5
LDLR-208ENST00000558518 ASMTLO95671 621 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 RPL7AP62424 266 aaKnown RBP11.96□□□□□ -0.5
LDLR-208ENST00000558518 FAXCQ5TGI0 409 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 C1orf146Q5VVC0 180 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 KRT39Q6A163 491 aa11.96□□□□□ -0.5
LDLR-208ENST00000558518 IZUMO2Q6UXV1 221 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms