RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 NT5C1B-RDH14C9J2C7 533 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 F8W810 466 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 NRP1O14786 923 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 ADCY5O95622 1261 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 ASS1P00966 412 aaKnown RBP10.33□□□□□ -0.76
CUX1-216ENST00000558469 GALTP07902 379 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 MYOGP15173 224 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 ATICP31939 592 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 PBX3P40426 434 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 PNPLA4P41247 253 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 SLC11A1P49279 550 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 ALDH7A1P49419 539 aaKnown RBP10.33□□□□□ -0.76
CUX1-216ENST00000558469 LILRA4P59901 499 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 ZNF699Q32M78 642 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 WDR72Q3MJ13 1102 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 SPOPLQ6IQ16 392 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 DCLRE1AQ6PJP8 1040 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 TDHQ8IZJ6 230 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 FIBCD1Q8N539 461 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 LRRC52Q8N7C0 313 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 C3orf58Q8NDZ4 430 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 NEK11Q8NG66 645 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 HASPINQ8TF76 798 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 TAF4BQ92750 862 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 TATDN2Q93075 761 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 ZNF560Q96MR9 790 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 TMEM175Q9BSA9 504 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 XYLT2Q9H1B5 865 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 NXF1Q9UBU9 619 aaKnown RBP10.33□□□□□ -0.76
CUX1-216ENST00000558469 SIK3Q9Y2K2 1263 aa10.33□□□□□ -0.76
CUX1-216ENST00000558469 PRG3Q9Y2Y8 225 aaPredicted RBP10.33□□□□□ -0.76
CUX1-216ENST00000558469 MYH10P35580 1976 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.32□□□□□ -0.76
CUX1-216ENST00000558469 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.32□□□□□ -0.76
CUX1-216ENST00000558469 KPNA7A9QM74 516 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 SPTLC1O15269 473 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 TADA2AO75478 443 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 B3GAT3O94766 335 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 KIF4AO95239 1232 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 ITGB1P05556 798 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 LAG3P18627 525 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 PBX1P40424 430 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 TAF6P49848 677 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 NOP14P78316 857 aaKnown RBP10.32□□□□□ -0.76
CUX1-216ENST00000558469 SV2CQ496J9 727 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 ZNF667Q5HYK9 610 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 KLHDC7AQ5VTJ3 777 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 PHLDB3Q6NSJ2 640 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 KCNT2Q6UVM3 1135 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 RRAGAQ7L523 313 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 VSTM4Q8IW00 320 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 ARHGEF19Q8IW93 802 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 COLGALT1Q8NBJ5 622 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 MRFAP1L1Q96HT8 127 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 ZNF558Q96NG5 402 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 NT5C1BQ96P26 610 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 COLEC11Q9BWP8 271 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 APOBEC3GQ9HC16 384 aaKnown RBP10.32□□□□□ -0.76
CUX1-216ENST00000558469 SIX2Q9NPC8 291 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 AAASQ9NRG9 546 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 FAM207AQ9NSI2 230 aaPredicted RBP10.32□□□□□ -0.76
CUX1-216ENST00000558469 POLIQ9UNA4 740 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 NUB1Q9Y5A7 615 aa10.32□□□□□ -0.76
CUX1-216ENST00000558469 LINC01553A4QN01 128 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 I3L4J1 428 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 NOL4O94818 638 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 STAU1O95793 577 aaKnown RBP10.31□□□□□ -0.76
CUX1-216ENST00000558469 P4HA1P13674 534 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 TRIM21P19474 475 aaKnown RBP10.31□□□□□ -0.76
CUX1-216ENST00000558469 BRCC3P46736 316 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 TNNC1P63316 161 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 TIGD5Q53EQ6 642 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 SPECC1LQ69YQ0 1117 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 DPY19L2P1Q6NXN4 242 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 GJB7Q6PEY0 223 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 CD300LGQ6UXG3 332 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 DSTYKQ6XUX3 929 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 SCARA5Q6ZMJ2 495 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 TMC6Q7Z403 805 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 DRC7Q8IY82 874 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 PPM1KQ8N3J5 372 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 PDCD7Q8N8D1 485 aaKnown RBP10.31□□□□□ -0.76
CUX1-216ENST00000558469 CLP1Q92989 425 aaKnown RBP10.31□□□□□ -0.76
CUX1-216ENST00000558469 SENP8Q96LD8 212 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 MMS19Q96T76 1030 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 VRTNQ9H8Y1 702 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 UBE2TQ9NPD8 197 aaPredicted RBP10.31□□□□□ -0.76
CUX1-216ENST00000558469 PLCB1Q9NQ66 1216 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 APEX2Q9UBZ4 518 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 DNAJC12Q9UKB3 198 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 ADAM28Q9UKQ2 775 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 PCDHB12Q9Y5F1 795 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 PCDHA11Q9Y5I1 949 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 SNX9Q9Y5X1 595 aa10.31□□□□□ -0.76
CUX1-216ENST00000558469 TMEM189-UBE2V1I3L0A0 370 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 CYB561D2O14569 222 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 EPHB6O15197 1021 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 TRAPPC3O43617 180 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 HUS1O60921 280 aa10.3□□□□□ -0.76
CUX1-216ENST00000558469 CA3P07451 260 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms