RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 MRPL17Q9NRX2 175 aaKnown RBP16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 ANO10Q9NW15 660 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 PCDHB8Q9UN66 801 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 TRANK1O15050 2925 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 SYN3O14994 580 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 PER2O15055 1255 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 GTF2F1P35269 517 aaKnown RBP eCLIP16■□□□□ 0.15
VIPAS39-210ENST00000557466 PNPLA4P41247 253 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 GCLMP48507 274 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 NRIP1P48552 1158 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 TYRO3Q06418 890 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 DUSP6Q16828 381 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 SKOR2Q2VWA4 1001 aaPredicted RBP16■□□□□ 0.15
VIPAS39-210ENST00000557466 ZACNQ401N2 412 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 DCAF17Q5H9S7 520 aaPredicted RBP16■□□□□ 0.15
VIPAS39-210ENST00000557466 DSTYKQ6XUX3 929 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 C15orf39Q6ZRI6 1047 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 RBM23Q86U06 439 aaKnown RBP16■□□□□ 0.15
VIPAS39-210ENST00000557466 GPR65Q8IYL9 337 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 SENP8Q96LD8 212 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 TLE6Q9H808 572 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 MMRN2Q9H8L6 949 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 ARMCX3Q9UH62 379 aaPredicted RBP16■□□□□ 0.15
VIPAS39-210ENST00000557466 SSX2IPQ9Y2D8 614 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 COL6A3P12111 3177 aa16■□□□□ 0.15
VIPAS39-210ENST00000557466 KPNA7A9QM74 516 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 IKBKBO14920 756 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 PHACTR2O75167 634 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 VNN1O95497 513 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 CST3P01034 146 aaPredicted RBP15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 CNPP09543 421 aaKnown RBP15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 RPL17P18621 184 aaKnown RBP15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 PAX3P23760 479 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 PSMD5Q16401 504 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 CT47A1Q5JQC4 288 aaPredicted RBP15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 VARS2Q5ST30 1063 aaKnown RBP15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 TCERG1LQ5VWI1 586 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 SV2AQ7L0J3 742 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 FRMD5Q7Z6J6 570 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 LNX1Q8TBB1 728 aaPredicted RBP15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 PPP2R3CQ969Q6 453 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 SLC35C1Q96A29 364 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 HPDLQ96IR7 371 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 KLHL5Q96PQ7 755 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 DNAJC25Q9H1X3 360 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 RXFP1Q9HBX9 757 aa15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 METTL14Q9HCE5 456 aaKnown RBP15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 TIMM13Q9Y5L4 95 aaPredicted RBP15.99■□□□□ 0.15
VIPAS39-210ENST00000557466 MTCL1Q9Y4B5 1905 aaKnown RBP15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 SYCE3A1L190 88 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 TEX28O15482 410 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 LINC01565O15544 149 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 CLASP2O75122 1294 aaKnown RBP15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 FGFR1OPO95684 399 aaKnown RBP15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 GNA14O95837 355 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 ODC1P11926 461 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 PIK3CAP42336 1068 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 MARSP56192 900 aaKnown RBP15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 MYL6P60660 151 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 TRPC3Q13507 836 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 TPD52L1Q16890 204 aaPredicted RBP15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 GLYCTKQ8IVS8 523 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 VN1R2Q8NFZ6 395 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 CNOT6LQ96LI5 555 aaKnown RBP15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 FUCA2Q9BTY2 467 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 EMILIN2Q9BXX0 1053 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 XYLT2Q9H1B5 865 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 IGFLR1Q9H665 355 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 TMEM8AQ9HCN3 771 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 MTRRQ9UBK8 725 aa15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 R3HCC1Q9Y3T6 440 aaKnown RBP15.98■□□□□ 0.15
VIPAS39-210ENST00000557466 CYB561D2O14569 222 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 ADAM12O43184 909 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 HLA-DRAP01903 254 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 TYMPP19971 482 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 GTF2H1P32780 548 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 MXI1P50539 228 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 RBM10P98175 930 aaKnown RBP15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 CREMQ03060 361 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 MYO1EQ12965 1108 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 NCOA4Q13772 614 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 MRPL58Q14197 206 aaKnown RBP15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 COL19A1Q14993 1142 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 PDXDC1Q6P996 788 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 RSPO2Q6UXX9 243 aaPredicted RBP15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 ANKS3Q6ZW76 656 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 IRF2BP1Q8IU81 584 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 TRIM59Q8IWR1 403 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 APPL2Q8NEU8 664 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 TAS1R2Q8TE23 839 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 ELMO3Q96BJ8 720 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 CDCA3Q99618 268 aaPredicted RBP15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 GDAP2Q9NXN4 497 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 FNIP2Q9P278 1114 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 L1RE1Q9UN81 338 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 SNX9Q9Y5X1 595 aa15.97■□□□□ 0.15
VIPAS39-210ENST00000557466 STX10O60499 249 aa15.96■□□□□ 0.15
VIPAS39-210ENST00000557466 LETM1O95202 739 aaPredicted RBP15.96■□□□□ 0.15
VIPAS39-210ENST00000557466 STAU1O95793 577 aaKnown RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms