RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 CACNA2D4Q7Z3S7 1137 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 MFSD6LQ8IWD5 586 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 YAF2Q8IY57 180 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 C3orf58Q8NDZ4 430 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 GAB3Q8WWW8 586 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 RSPRY1Q96DX4 576 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 LOXL4Q96JB6 756 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 POLR3FQ9H1D9 316 aaPredicted RBP10.25□□□□□ -0.77
SYNE2-224ENST00000557024 PDZD7Q9H5P4 517 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 SLITRK6Q9H5Y7 841 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 USP20Q9Y2K6 914 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 GDAQ9Y2T3 454 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 RBM19Q9Y4C8 960 aaKnown RBP10.25□□□□□ -0.77
SYNE2-224ENST00000557024 INSL5Q9Y5Q6 135 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 COL4A2P08572 1712 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 SRRM3A6NNA2 597 aaPredicted RBP10.24□□□□□ -0.77
SYNE2-224ENST00000557024 SOBPA7XYQ1 873 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 SPECC1L-ADORA2AF8WAN1 911 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 TMEM189-UBE2V1I3L0A0 370 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 N4BP3O15049 544 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 MARCH6O60337 910 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 ABLIM3O94929 683 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 TOP3BO95985 862 aaKnown RBP10.24□□□□□ -0.77
SYNE2-224ENST00000557024 CCDC192P0DO97 292 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 ATF2P15336 505 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 CTHP32929 405 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 MPLP40238 635 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 MLLT6P55198 1093 aaPredicted RBP10.24□□□□□ -0.77
SYNE2-224ENST00000557024 CCT2P78371 535 aaKnown RBP10.24□□□□□ -0.77
SYNE2-224ENST00000557024 RING1Q06587 406 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 TEAD2Q15562 447 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 NPY5RQ15761 445 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 DGKKQ5KSL6 1271 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 PLA2G2CQ5R387 149 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 IQCEQ6IPM2 695 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 SLC8B1Q6J4K2 584 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 MAEAQ7L5Y9 396 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 TCEAL8Q8IYN2 117 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 ELMOD1Q8N336 334 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 FAM200AQ8TCP9 573 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 HAS1Q92839 578 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 TATDN2Q93075 761 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 MSANTD3Q96H12 275 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 CCDC43Q96MW1 224 aaKnown RBP10.24□□□□□ -0.77
SYNE2-224ENST00000557024 EDEM2Q9BV94 578 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 C8orf33Q9H7E9 229 aaPredicted RBP10.24□□□□□ -0.77
SYNE2-224ENST00000557024 TRPV4Q9HBA0 871 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 GOLGA2P5Q9HBQ8 144 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 GPRC5CQ9NQ84 441 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 CEP72Q9P209 647 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 WASF3Q9UPY6 502 aa10.24□□□□□ -0.77
SYNE2-224ENST00000557024 TDRD15B5MCY1 1934 aaKnown RBP10.23□□□□□ -0.77
SYNE2-224ENST00000557024 A0A087WWV3 80 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 MYBPHLA2RUH7 354 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 TMEM8BA6NDV4 472 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 C4orf47A7E2U8 309 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 CHADO15335 359 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 TRAPPC3O43617 180 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 USO1O60763 962 aaKnown RBP10.23□□□□□ -0.77
SYNE2-224ENST00000557024 DGAT1O75907 488 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 SLITRK3O94933 977 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 HSP90AA1P07900 732 aaKnown RBP10.23□□□□□ -0.77
SYNE2-224ENST00000557024 LIG1P18858 919 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 PON2Q15165 354 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 UPP1Q16831 310 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 PKN3Q6P5Z2 889 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 C1orf228Q6PIY5 440 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 LRSAM1Q6UWE0 723 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 KRT25Q7Z3Z0 450 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 DAGLBQ8NCG7 672 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 ZCCHC14Q8WYQ9 949 aaKnown RBP10.23□□□□□ -0.77
SYNE2-224ENST00000557024 GATA6Q92908 595 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 ZFYVE19Q96K21 471 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 PRIMPOLQ96LW4 560 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 ZSCAN31Q96LW9 406 aaPredicted RBP10.23□□□□□ -0.77
SYNE2-224ENST00000557024 ZNF512Q96ME7 567 aaPredicted RBP10.23□□□□□ -0.77
SYNE2-224ENST00000557024 AIFM3Q96NN9 605 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 PPP1R10Q96QC0 940 aaKnown RBP10.23□□□□□ -0.77
SYNE2-224ENST00000557024 ASAH2Q9NR71 780 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 VPS45Q9NRW7 570 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 PRMT7Q9NVM4 692 aaPredicted RBP10.23□□□□□ -0.77
SYNE2-224ENST00000557024 LIMCH1Q9UPQ0 1083 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 PCDHGA5Q9Y5G8 931 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 LAMA1P25391 3075 aa10.23□□□□□ -0.77
SYNE2-224ENST00000557024 DSPP15924 2871 aaKnown RBP10.23□□□□□ -0.77
SYNE2-224ENST00000557024 AKAP13Q12802 2813 aa10.22□□□□□ -0.77
SYNE2-224ENST00000557024 NBEAQ8NFP9 2946 aa10.22□□□□□ -0.77
SYNE2-224ENST00000557024 CCNT1O60563 726 aaKnown RBP10.22□□□□□ -0.77
SYNE2-224ENST00000557024 GCFC2P16383 781 aaKnown RBP10.22□□□□□ -0.77
SYNE2-224ENST00000557024 SSRP1Q08945 709 aaKnown RBP10.22□□□□□ -0.77
SYNE2-224ENST00000557024 TWF1Q12792 350 aa10.22□□□□□ -0.77
SYNE2-224ENST00000557024 PRPF4BQ13523 1007 aaKnown RBP10.22□□□□□ -0.77
SYNE2-224ENST00000557024 CCINQ13939 588 aa10.22□□□□□ -0.77
SYNE2-224ENST00000557024 TOB2Q14106 344 aaPredicted RBP10.22□□□□□ -0.77
SYNE2-224ENST00000557024 SH3PXD2AQ5TCZ1 1133 aa10.22□□□□□ -0.77
SYNE2-224ENST00000557024 EEF1DP3Q658K8 133 aa10.22□□□□□ -0.77
SYNE2-224ENST00000557024 PPP4R3AQ6IN85 833 aa10.22□□□□□ -0.77
SYNE2-224ENST00000557024 NEK8Q86SG6 692 aa10.22□□□□□ -0.77
SYNE2-224ENST00000557024 PACS2Q86VP3 889 aa10.22□□□□□ -0.77
SYNE2-224ENST00000557024 RALGPS2Q86X27 583 aaPredicted RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms