RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	NCALD	P61601	193 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	DLG4	P78352	724 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PDAP1	Q13442	181 aa	Known RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	MED21	Q13503	144 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PKN2	Q16513	984 aa	Known RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	DNAL1	Q4LDG9	190 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	TMEM259	Q4ZIN3	620 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	WASHC2D	Q5SRD0	308 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	RARS2	Q5T160	578 aa	Known RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PCNX4	Q63HM2	1172 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ZNF662	Q6ZS27	426 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ACAD11	Q709F0	780 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	NCAPG2	Q86XI2	1143 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	MREG	Q8N565	214 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	CYGB	Q8WWM9	190 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	CENPT	Q96BT3	561 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	FGFBP2	Q9BYJ0	223 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	BLOC1S4	Q9NUP1	217 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ASNSD1	Q9NWL6	643 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	IL1RAPL1	Q9NZN1	696 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	SLC9A2	Q9UBY0	812 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	CNOT7	Q9UIV1	285 aa	Known RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	LAMA4	Q16363	1823 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	SPEF2	Q9C093	1822 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	GNGT2	O14610	69 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PYGB	P11216	843 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	CENPP	Q6IPU0	288 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	SWSAP1	Q6NVH7	229 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	WDR75	Q8IWA0	830 aa	Known RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	RIBC1	Q8N443	379 aa	Predicted RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	STK32A	Q8WU08	396 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PURB	Q96QR8	312 aa	Known RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PAGR1	Q9BTK6	254 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	UBXN6	Q9BZV1	441 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	AGPAT3	Q9NRZ7	376 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	UVRAG	Q9P2Y5	699 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PI4KB	Q9UBF8	816 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	AKT3	Q9Y243	479 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	NCAN	O14594	1321 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PALM3	A6NDB9	673 aa	Predicted RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	C2orf71	A6NGG8	1288 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	AIM2	O14862	343 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PSTPIP1	O43586	416 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	CDH16	O75309	829 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	RAD17	O75943	681 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	SLC4A1	P02730	911 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	YY1	P25490	414 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ACOT2	P49753	483 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	CASP5	P51878	434 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	FOXD4	Q12950	439 aa	Predicted RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	RBBP7	Q16576	425 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	CLEC16A	Q2KHT3	1053 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	TCHHL1	Q5QJ38	904 aa	Predicted RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	THEMIS2	Q5TEJ8	643 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	SLC30A10	Q6XR72	485 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PPIL6	Q8IXY8	311 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	GCOM2	Q9BZD3	368 aa	Predicted RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	GABBR1	Q9UBS5	961 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	TAGLN3	Q9UI15	199 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PIK3CD	O00329	1044 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	GJB6	O95452	261 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PSMG1	O95456	288 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	RARG	P13631	454 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	LCP1	P13796	627 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PTDSS1	P48651	473 aa	Known RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	RASA2	Q15283	850 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	CCDC92	Q53HC0	331 aa	Predicted RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	HAUS6	Q7Z4H7	955 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	C4orf32	Q8N8J7	132 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	FBXL13	Q8NEE6	735 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ATP6V0A1	Q93050	837 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ART4	Q93070	314 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	CCDC17	Q96LX7	622 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	PAFAH2	Q99487	392 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ZNF341	Q9BYN7	854 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ARMCX1	Q9P291	453 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	TLK1	Q9UKI8	766 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	KRT38	O76015	456 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	MARCKSL1	P49006	195 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	PLOD1	Q02809	727 aa	Predicted RBP	5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	SLC34A1	Q06495	639 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	NSUN2	Q08J23	767 aa	Known RBP eCLIP	5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	STX3	Q13277	289 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	AUH	Q13825	339 aa	Known RBP	5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	MTFR1	Q15390	333 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	TRIP10	Q15642	601 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005		Q4G0T1	1027 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	CBWD6	Q4V339	395 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	CBWD3	Q5JTY5	395 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	CBWD5	Q5RIA9	395 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	INTS5	Q6P9B9	1019 aa	Known RBP	5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	C16orf89	Q6UX73	402 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	TMEM179	Q6ZVK1	233 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	EEPD1	Q7L9B9	569 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	FBXO33	Q7Z6M2	555 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	MFN1	Q8IWA4	741 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	VGLL2	Q8N8G2	317 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	RFWD2	Q8NHY2	731 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	MIS12	Q9H081	205 aa		5.23	□□□□□ -1.57
SYNE2-223	ENST00000557005	NRBP2	Q9NSY0	501 aa		5.23	□□□□□ -1.57

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