RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 NPHS2Q9NP85 383 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 PIM2Q9P1W9 311 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 MARCOQ9UEW3 520 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 PNMA3Q9UL41 463 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 USP15Q9Y4E8 981 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 IVNS1ABPQ9Y6Y0 642 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 UBE4BO95155 1302 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 A0A1B0GUL6 1792 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 ANKRD36CQ5JPF3 1778 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 PPFIA2O75334 1257 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 GZMAP12544 262 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 ITIH2P19823 946 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 ECHS1P30084 290 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 TNFSF9P41273 254 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 NFX1Q12986 1120 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 MAPK6Q16659 721 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 PCNX4Q63HM2 1172 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 EXOC3L1Q86VI1 746 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 RASGEF1CQ8N431 466 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 ZNF280CQ8ND82 737 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 SHC3Q92529 594 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 RPS6KC1Q96S38 1066 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 FAM49AQ9H0Q0 323 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 STXBP5LQ9Y2K9 1186 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 INHBAP08476 426 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 HMGB2P26583 209 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 XKR3Q5GH77 459 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 ARMC9Q7Z3E5 817 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 ZNF572Q7Z3I7 529 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 CD302Q8IX05 232 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 C4orf19Q8IY42 314 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 SPOCK2Q92563 424 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 MAML1Q92585 1016 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 VTI1AQ96AJ9 217 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 FAM149B1Q96BN6 582 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 TRIM11Q96F44 468 aa12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 MYCBPQ99417 103 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.85□□□□□ -0.35
CCDC88C-211ENST00000556726 CCDC88AQ3V6T2 1871 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 DRD4P21917 467 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 TARSP26639 723 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 FAM102AQ5T9C2 384 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 C11orf63Q6NUN7 778 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 CENPUQ71F23 418 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 PPM1NQ8N819 430 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 CEP120Q8N960 986 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 PRPF31Q8WWY3 499 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 SGSM3Q96HU1 749 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 TEX13BQ9BXU2 312 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 SLCO1B3Q9NPD5 702 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 DMAC2Q9NW81 257 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 TPX2Q9ULW0 747 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 VWA5AO00534 786 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 DIAPH2O60879 1101 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 DESP17661 470 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 SSTR1P30872 391 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 ZDHHC24Q6UX98 284 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 SLFN11Q7Z7L1 901 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 FAM71DQ8N9W8 422 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 TMEM237Q96Q45 408 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 PRM3Q9NNZ6 103 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 PARVAQ9NVD7 372 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 GPATCH2LQ9NWQ4 482 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 TMEM59LQ9UK28 342 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 CSADQ9Y600 493 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 SCINQ9Y6U3 715 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 KAT6AQ92794 2004 aa12.84□□□□□ -0.35
CCDC88C-211ENST00000556726 DDX60Q8IY21 1712 aaKnown RBP12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 CFAP69A5D8W1 941 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 M0QYV0 167 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 TTC4O95801 387 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 MT-ND3P03897 115 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 KRT3P12035 628 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 TCF4P15884 667 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 CLCN3P51790 818 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 NRLP54845 237 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 KCNJ2P63252 427 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 ZNF667Q5HYK9 610 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 FEZF2Q8TBJ5 459 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 LPAR1Q92633 364 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 ANKRD36BP1Q96IX9 119 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 SENP7Q9BQF6 1050 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 GGA3Q9NZ52 723 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 NINJ2Q9NZG7 142 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 G3BP2Q9UN86 482 aaKnown RBP12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 NCANO14594 1321 aa12.83□□□□□ -0.35
CCDC88C-211ENST00000556726 SMCHD1A6NHR9 2005 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 MYH1P12882 1939 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 BTNL10A8MVZ5 291 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 CDH16O75309 829 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 SKAP2O75563 359 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 POLR2BP30876 1174 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 MAN1A1P33908 653 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 NOVP48745 357 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 GTF2BQ00403 316 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 AMHR2Q16671 573 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 ERMARDQ5T6L9 678 aa12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 TDRD10Q5VZ19 366 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-211ENST00000556726 ZDHHC14Q8IZN3 488 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms