RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 H7C4K7 107 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 CLIC2O15247 247 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 TBC1D4O60343 1298 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 GPR37L1O60883 481 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 ZMYND10O75800 440 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 PAPLNO95428 1278 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 C8AP07357 584 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 LILRA4P59901 499 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 SNRPFP62306 86 aaKnown RBP14.84□□□□□ -0.03
SHMT2-219ENST00000555563 ROR1Q01973 937 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 PSMD2Q13200 908 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 MRPL58Q14197 206 aaKnown RBP14.84□□□□□ -0.03
SHMT2-219ENST00000555563 CTXN3Q4LDR2 81 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 LIN9Q5TKA1 542 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 SLC8B1Q6J4K2 584 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 ZNF280DQ6N043 979 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 DSTYKQ6XUX3 929 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 ZNF707Q96C28 371 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-219ENST00000555563 TSHZ2Q9NRE2 1034 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 FBXL5Q9UKA1 691 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 TIMM13Q9Y5L4 95 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-219ENST00000555563 PTPRJQ12913 1337 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 BDP1A6H8Y1 2624 aa14.83□□□□□ -0.03
SHMT2-219ENST00000555563 ZNF233A6NK53 670 aa14.83□□□□□ -0.04
SHMT2-219ENST00000555563 RHOBTB3O94955 611 aa14.83□□□□□ -0.04
SHMT2-219ENST00000555563 YWHAHQ04917 246 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-219ENST00000555563 FAM160A1Q05DH4 1040 aa14.83□□□□□ -0.04
SHMT2-219ENST00000555563 SNW1Q13573 536 aaKnown RBP14.83□□□□□ -0.04
SHMT2-219ENST00000555563 SNRNP35Q16560 246 aaKnown RBP14.83□□□□□ -0.04
SHMT2-219ENST00000555563 LMBRD2Q68DH5 695 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-219ENST00000555563 C12orf56Q8IXR9 622 aa14.83□□□□□ -0.04
SHMT2-219ENST00000555563 C1orf127Q8N9H9 656 aa14.83□□□□□ -0.04
SHMT2-219ENST00000555563 XXYLT1Q8NBI6 393 aa14.83□□□□□ -0.04
SHMT2-219ENST00000555563 ENGASEQ8NFI3 743 aa14.83□□□□□ -0.04
SHMT2-219ENST00000555563 SLC7A14Q8TBB6 771 aa14.83□□□□□ -0.04
SHMT2-219ENST00000555563 SMG7Q92540 1137 aaKnown RBP14.83□□□□□ -0.04
SHMT2-219ENST00000555563 ZNF560Q96MR9 790 aa14.83□□□□□ -0.04
SHMT2-219ENST00000555563 MTMR12Q9C0I1 747 aa14.83□□□□□ -0.04
SHMT2-219ENST00000555563 KIAA1586Q9HCI6 787 aa14.83□□□□□ -0.04
SHMT2-219ENST00000555563 WDR27A2RRH5 827 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 PI4K2BG5E9Z4 385 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 OAZ2O95190 189 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 ITGB3P05106 788 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 TMEM191BP0C7N4 346 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 ODC1P11926 461 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 POLR2BP30876 1174 aaKnown RBP14.82□□□□□ -0.04
SHMT2-219ENST00000555563 TAF6P49848 677 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 ARPP19P56211 112 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 PNOCQ13519 176 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 KCNB1Q14721 858 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 CYP26C1Q6V0L0 522 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 CCDC149Q6ZUS6 474 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 USP37Q86T82 979 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 RNF135Q8IUD6 432 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 CXorf38Q8TB03 319 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 CCDC47Q96A33 483 aaKnown RBP14.82□□□□□ -0.04
SHMT2-219ENST00000555563 CCDC34Q96HJ3 373 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 SENP8Q96LD8 212 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 RHOBTB2Q9BYZ6 727 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 PRKD2Q9BZL6 878 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 KCTD10Q9H3F6 313 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 CGNQ9P2M7 1197 aaKnown RBP14.82□□□□□ -0.04
SHMT2-219ENST00000555563 MUTYHQ9UIF7 546 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 ITGA11Q9UKX5 1188 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 NR2E1Q9Y466 385 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 CLUHO75153 1309 aa14.82□□□□□ -0.04
SHMT2-219ENST00000555563 C2CD4DB7Z1M9 353 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 HNRNPA1P09651 372 aaKnown RBP eCLIP14.81□□□□□ -0.04
SHMT2-219ENST00000555563 TYMPP19971 482 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 PAX3P23760 479 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 HOXA9P31269 272 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 CYP24A1Q07973 514 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 SV2CQ496J9 727 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 PPM1LQ5SGD2 360 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 SCARA3Q6AZY7 606 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 OVOS1Q6IE37 1185 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 TDRD5Q8NAT2 981 aaKnown RBP14.81□□□□□ -0.04
SHMT2-219ENST00000555563 RDH13Q8NBN7 331 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 OR5B17Q8NGF7 314 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 ZNF461Q8TAF7 563 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 GOLGA5Q8TBA6 731 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 CACTINQ8WUQ7 758 aaKnown RBP14.81□□□□□ -0.04
SHMT2-219ENST00000555563 PIDD1Q9HB75 910 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 INTS13Q9NVM9 706 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 CHMP5Q9NZZ3 219 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 SIX4Q9UIU6 781 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 AGAP1Q9UPQ3 857 aa14.81□□□□□ -0.04
SHMT2-219ENST00000555563 CCL16O15467 120 aa14.8□□□□□ -0.04
SHMT2-219ENST00000555563 DCXO43602 365 aa14.8□□□□□ -0.04
SHMT2-219ENST00000555563 EXOC3O60645 756 aa14.8□□□□□ -0.04
SHMT2-219ENST00000555563 ABLIM3O94929 683 aa14.8□□□□□ -0.04
SHMT2-219ENST00000555563 OR4Q2P0C623 313 aa14.8□□□□□ -0.04
SHMT2-219ENST00000555563 DLATP10515 647 aaKnown RBP14.8□□□□□ -0.04
SHMT2-219ENST00000555563 CPB1P15086 417 aa14.8□□□□□ -0.04
SHMT2-219ENST00000555563 PNPLA4P41247 253 aa14.8□□□□□ -0.04
SHMT2-219ENST00000555563 BFSP1Q12934 665 aa14.8□□□□□ -0.04
SHMT2-219ENST00000555563 PSMD6Q15008 389 aa14.8□□□□□ -0.04
SHMT2-219ENST00000555563 SURF1Q15526 300 aa14.8□□□□□ -0.04
SHMT2-219ENST00000555563 WDR49Q8IV35 697 aa14.8□□□□□ -0.04
SHMT2-219ENST00000555563 LRRC52Q8N7C0 313 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms