RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 GFAPP14136 432 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 MAGEA4P43358 317 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 ACTN3Q08043 901 aaPredicted RBP12.1□□□□□ -0.47
SYNE2-208ENST00000553289 VPS72Q15906 364 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 RABGAP1LQ5R372 815 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.1□□□□□ -0.47
SYNE2-208ENST00000553289 CYP2C8P10632 490 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 PRLRP16471 622 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 LONRF1Q17RB8 773 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 EFHC1Q5JVL4 640 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 USP49Q70CQ1 688 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 TRAF3IP3Q9Y228 551 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 RNF135Q8IUD6 432 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 FEZF2Q8TBJ5 459 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 CLMNQ96JQ2 1002 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 DNAJC7Q99615 494 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 MAD2L2Q9UI95 211 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 FRMPD1Q5SYB0 1578 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 EEF2KO00418 725 aaKnown RBP12.1□□□□□ -0.47
SYNE2-208ENST00000553289 HBP1O60381 514 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 GPD1P21695 349 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 LSP1P33241 339 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 PTK7Q13308 1070 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 ATF7IP2Q5U623 682 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 TTC39BQ5VTQ0 682 aaPredicted RBP12.1□□□□□ -0.47
SYNE2-208ENST00000553289 OTUB1Q96FW1 271 aaPredicted RBP12.1□□□□□ -0.47
SYNE2-208ENST00000553289 ARHGEF38Q9NXL2 777 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 GRID1Q9ULK0 1009 aa12.1□□□□□ -0.47
SYNE2-208ENST00000553289 INO80Q9ULG1 1556 aaPredicted RBP12.09□□□□□ -0.47
SYNE2-208ENST00000553289 ABCA9Q8IUA7 1624 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 POLBP06746 335 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 CDH2P19022 906 aaPredicted RBP12.09□□□□□ -0.47
SYNE2-208ENST00000553289 GRIK1P39086 918 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 EFL1Q7Z2Z2 1120 aaKnown RBP12.09□□□□□ -0.47
SYNE2-208ENST00000553289 PPIL6Q8IXY8 311 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 SEC16BQ96JE7 1060 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 ZNF668Q96K58 619 aaPredicted RBP12.09□□□□□ -0.47
SYNE2-208ENST00000553289 SERPINB12Q96P63 405 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 MRPL1Q9BYD6 325 aaKnown RBP12.09□□□□□ -0.47
SYNE2-208ENST00000553289 COG4Q9H9E3 785 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 RNF181Q9P0P0 153 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 JCADQ9P266 1359 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 F5H423 210 aaPredicted RBP12.09□□□□□ -0.47
SYNE2-208ENST00000553289 PSTPIP1O43586 416 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 CYBBP04839 570 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 PCSK1P29120 753 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 NLRP11P59045 1033 aaKnown RBP12.09□□□□□ -0.47
SYNE2-208ENST00000553289 PCYOX1LQ8NBM8 494 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 CATSPERBQ9H7T0 1116 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 DNAJC6O75061 913 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 HMOX2P30519 316 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 COILP38432 576 aaPredicted RBP12.09□□□□□ -0.47
SYNE2-208ENST00000553289 PNPLA4P41247 253 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 ALDH18A1P54886 795 aaKnown RBP12.09□□□□□ -0.47
SYNE2-208ENST00000553289 TROAPQ12815 778 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 PDAP1Q13442 181 aaKnown RBP12.09□□□□□ -0.47
SYNE2-208ENST00000553289 CAPRIN2Q6IMN6 1127 aaKnown RBP12.09□□□□□ -0.47
SYNE2-208ENST00000553289 TRPM8Q7Z2W7 1104 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 SZRD1Q7Z422 152 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 COL23A1Q86Y22 540 aaPredicted RBP12.09□□□□□ -0.47
SYNE2-208ENST00000553289 PTPRN2Q92932 1015 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 DCUN1D1Q96GG9 259 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 C9orf72Q96LT7 481 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 CASS4Q9NQ75 786 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 CYP11B2P19099 503 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 KLRC1P26715 233 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 GTF2H1P32780 548 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 NPEPPSP55786 919 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 STYK1Q6J9G0 422 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 NUDT18Q6ZVK8 323 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 MICALL2Q8IY33 904 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 SH2D3CQ8N5H7 860 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 ARL8AQ96BM9 186 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 ZIM3Q96PE6 472 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 KLHL11Q9NVR0 708 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 PKD2L2Q9NZM6 624 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 TRIM10Q9UDY6 481 aa12.09□□□□□ -0.47
SYNE2-208ENST00000553289 SETD1BQ9UPS6 1966 aaKnown RBP12.08□□□□□ -0.48
SYNE2-208ENST00000553289 LRRIQ3A6PVS8 624 aaPredicted RBP12.08□□□□□ -0.48
SYNE2-208ENST00000553289 HNRNPRO43390 633 aaKnown RBP12.08□□□□□ -0.48
SYNE2-208ENST00000553289 TLR2O60603 784 aa12.08□□□□□ -0.48
SYNE2-208ENST00000553289 FAM107AO95990 144 aa12.08□□□□□ -0.48
SYNE2-208ENST00000553289 ENO1P06733 434 aaKnown RBP12.08□□□□□ -0.48
SYNE2-208ENST00000553289 MYL2P10916 166 aa12.08□□□□□ -0.48
SYNE2-208ENST00000553289 CCND1P24385 295 aa12.08□□□□□ -0.48
SYNE2-208ENST00000553289 MED21Q13503 144 aa12.08□□□□□ -0.48
SYNE2-208ENST00000553289 FLOT2Q14254 428 aa12.08□□□□□ -0.48
SYNE2-208ENST00000553289 USP10Q14694 798 aaKnown RBP12.08□□□□□ -0.48
SYNE2-208ENST00000553289 PATL1Q86TB9 770 aaKnown RBP12.08□□□□□ -0.48
SYNE2-208ENST00000553289 YIPF3Q9GZM5 350 aa12.08□□□□□ -0.48
SYNE2-208ENST00000553289 CCDC90BQ9GZT6 254 aa12.08□□□□□ -0.48
SYNE2-208ENST00000553289 ZC3H11AO75152 810 aaKnown RBP eCLIP12.08□□□□□ -0.48
SYNE2-208ENST00000553289 SUPT3HO75486 399 aa12.08□□□□□ -0.48
SYNE2-208ENST00000553289 HIST1H2AGP0C0S8 130 aaPredicted RBP12.08□□□□□ -0.48
SYNE2-208ENST00000553289 HIST1H2ADP20671 130 aa12.08□□□□□ -0.48
SYNE2-208ENST00000553289 RPS12P25398 132 aaKnown RBP12.08□□□□□ -0.48
SYNE2-208ENST00000553289 PTPAQ15257 358 aa12.08□□□□□ -0.48
SYNE2-208ENST00000553289 ZC2HC1CQ53FD0 456 aaPredicted RBP12.08□□□□□ -0.48
SYNE2-208ENST00000553289 BOLA3Q53S33 107 aa12.08□□□□□ -0.48
SYNE2-208ENST00000553289 ACAD10Q6JQN1 1059 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms