RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 TBX20Q9UMR3 447 aa12.48□□□□□ -0.41
NEK3-204ENST00000552973 NDRG2Q9UN36 371 aaKnown RBP12.48□□□□□ -0.41
NEK3-204ENST00000552973 SLC27A5Q9Y2P5 690 aa12.48□□□□□ -0.41
NEK3-204ENST00000552973 YIPF1Q9Y548 306 aa12.48□□□□□ -0.41
NEK3-204ENST00000552973 DOCK8Q8NF50 2099 aa12.48□□□□□ -0.41
NEK3-204ENST00000552973 VWA8A3KMH1 1905 aa12.48□□□□□ -0.41
NEK3-204ENST00000552973 MTCL1Q9Y4B5 1905 aaKnown RBP12.47□□□□□ -0.41
NEK3-204ENST00000552973 SHISA7A6NL88 538 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 M0QZQ0 153 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 OAZ2O95190 189 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 VNN2O95498 520 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 PLCG1P19174 1290 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 CYP3A5P20815 502 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 NMT1P30419 496 aaKnown RBP12.47□□□□□ -0.41
NEK3-204ENST00000552973 GDI1P31150 447 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 SF3A1Q15459 793 aaKnown RBP12.47□□□□□ -0.41
NEK3-204ENST00000552973 VITQ6UXI7 678 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 ZSCAN18Q8TBC5 510 aaPredicted RBP12.47□□□□□ -0.41
NEK3-204ENST00000552973 SMARCD2Q92925 531 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 AK8Q96MA6 479 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 TMEM209Q96SK2 561 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 OSBPL6Q9BZF3 934 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 SLITRK6Q9H5Y7 841 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 PARVGQ9HBI0 331 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 ASAH2Q9NR71 780 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 ODF2LQ9ULJ1 636 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 DOCK6Q96HP0 2047 aa12.47□□□□□ -0.41
NEK3-204ENST00000552973 A0A1W2PRU2 124 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 TISP43B9A030 160 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 ANKRD63C9JTQ0 380 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 SPTLC1O15269 473 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 OGTO15294 1046 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 NCAM2O15394 837 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 FAM189A1O60320 539 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 KINO60870 393 aaKnown RBP12.46□□□□□ -0.41
NEK3-204ENST00000552973 SOAT2O75908 522 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 MICAL2O94851 1124 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 NFICP08651 508 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 PSMC3P17980 439 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 AARSP49588 968 aaKnown RBP eCLIP12.46□□□□□ -0.41
NEK3-204ENST00000552973 ACOT2P49753 483 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 GPR17Q13304 367 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 FZD5Q13467 585 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 ZC2HC1CQ53FD0 456 aaPredicted RBP12.46□□□□□ -0.41
NEK3-204ENST00000552973 SPATA1Q5VX52 437 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 JADE1Q6IE81 842 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 SLC39A4Q6P5W5 647 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 ATAD1Q8NBU5 361 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 SHKBP1Q8TBC3 707 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 RAD54LQ92698 747 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 CLDN23Q96B33 292 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 NELL2Q99435 816 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 IKZF4Q9H2S9 585 aa12.46□□□□□ -0.41
NEK3-204ENST00000552973 ZNF334Q9HCZ1 680 aaPredicted RBP12.46□□□□□ -0.41
NEK3-204ENST00000552973 CPSF3Q9UKF6 684 aaKnown RBP12.46□□□□□ -0.41
NEK3-204ENST00000552973 MRPS17Q9Y2R5 130 aaKnown RBP12.46□□□□□ -0.41
NEK3-204ENST00000552973 MYO15AQ9UKN7 3530 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 NCANO14594 1321 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 A0A0B4J269 797 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 HEPACAM2A8MVW5 462 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 ZNF263O14978 683 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 XPOTO43592 962 aaKnown RBP12.45□□□□□ -0.42
NEK3-204ENST00000552973 TBCAO75347 108 aaKnown RBP12.45□□□□□ -0.42
NEK3-204ENST00000552973 PIGRP01833 764 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 ALDH1A3P47895 512 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 ZNF131P52739 623 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 EPHB3P54753 998 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 EPHA5P54756 1037 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 LILRA4P59901 499 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 MTAPQ13126 283 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 KYAT1Q16773 422 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 STXBP5Q5T5C0 1151 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 OVOS1Q6IE37 1185 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 CENPPQ6IPU0 288 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 USP49Q70CQ1 688 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 DYMQ7RTS9 669 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 MAP4K3Q8IVH8 894 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 TTC9BQ8N6N2 239 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 SUMF1Q8NBK3 374 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 BEST2Q8NFU1 509 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 TTC8Q8TAM2 541 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 ATRIPQ8WXE1 791 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 FAM3CQ92520 227 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 RUBCNQ92622 972 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 DNASE1L2Q92874 299 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 IRF7Q92985 503 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 RMDN1Q96DB5 314 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 RSPRY1Q96DX4 576 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 SENP8Q96LD8 212 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 FIZ1Q96SL8 496 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 LRRC3Q9BY71 257 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 DNAJC25Q9H1X3 360 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 LMAN1LQ9HAT1 526 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 UPF2Q9HAU5 1272 aaKnown RBP12.45□□□□□ -0.42
NEK3-204ENST00000552973 FBXO4Q9UKT5 387 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 MAFFQ9ULX9 164 aa12.45□□□□□ -0.42
NEK3-204ENST00000552973 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.45□□□□□ -0.42
NEK3-204ENST00000552973 MTMR11A4FU01 709 aa12.44□□□□□ -0.42
NEK3-204ENST00000552973 VPS37CA5D8V6 355 aaPredicted RBP12.44□□□□□ -0.42
NEK3-204ENST00000552973 OR6C75A6NL08 312 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms