RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 YY1AP1Q9H869 796 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 AVENQ9NQS1 362 aaPredicted RBP7.96□□□□□ -1.13
LIMA1-213ENST00000552720 RNF146Q9NTX7 359 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 ADAM22Q9P0K1 906 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 L3MBTL1Q9Y468 752 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 PCDHB2Q9Y5E7 798 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.96□□□□□ -1.13
LIMA1-213ENST00000552720 PHIPQ8WWQ0 1821 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 TLR3O15455 904 aaKnown RBP7.96□□□□□ -1.14
LIMA1-213ENST00000552720 BANF1O75531 89 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 PIAS1O75925 651 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 HARSP12081 509 aaKnown RBP7.96□□□□□ -1.14
LIMA1-213ENST00000552720 GNA15P30679 374 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 FOXN2P32314 431 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 GTF2H1P32780 548 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 IRX3P78415 501 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-213ENST00000552720 CXCL9Q07325 125 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 TMED2Q15363 201 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 BRDTQ58F21 947 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-213ENST00000552720 ZFYVE27Q5T4F4 411 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 WLSQ5T9L3 541 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 FAM47EQ6ZV65 393 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 ZNF365Q70YC5 407 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 GSTA5Q7RTV2 222 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 ANKLE1Q8NAG6 615 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 OR5B17Q8NGF7 314 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 CKAP2Q8WWK9 683 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 SPIRE2Q8WWL2 714 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 FAM212AQ96EL1 285 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 TEPSINQ96N21 525 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 FNBP1Q96RU3 617 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 PAIP2Q9BPZ3 127 aaKnown RBP7.96□□□□□ -1.14
LIMA1-213ENST00000552720 ECT2Q9H8V3 914 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 PDLIM7Q9NR12 457 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 CYP26B1Q9NR63 512 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 ANKFY1Q9P2R3 1169 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 DNPEPQ9ULA0 475 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.96□□□□□ -1.14
LIMA1-213ENST00000552720 NUB1Q9Y5A7 615 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 CTDP1Q9Y5B0 961 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-213ENST00000552720 PCDHB4Q9Y5E5 795 aa7.96□□□□□ -1.14
LIMA1-213ENST00000552720 GSTTP1A0A1W2PQM5 241 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 TTLL13PA6NNM8 815 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 VWA5AO00534 786 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 ATF7P17544 494 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-213ENST00000552720 GARTP22102 1010 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 KLRC2P26717 231 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 GCAP28676 217 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 STX2P32856 288 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 WDR4P57081 412 aaKnown RBP7.95□□□□□ -1.14
LIMA1-213ENST00000552720 SP2Q02086 613 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 MAP3K10Q02779 954 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 ZNF252P-AS1Q0IIN9 211 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 FSTL1Q12841 308 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 PTP4A2Q12974 167 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 MTM1Q13496 603 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 CUL2Q13617 745 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 RHOT1Q8IXI2 618 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 GRK7Q8WTQ7 553 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 RBM15Q96T37 977 aaKnown RBP eCLIP7.95□□□□□ -1.14
LIMA1-213ENST00000552720 MYCBPQ99417 103 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-213ENST00000552720 KIAA1683Q9H0B3 1180 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 C10orf88Q9H8K7 445 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 EURLQ9NYK6 297 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 ARHGAP28Q9P2N2 729 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 MCM8Q9UJA3 840 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 AGO2Q9UKV8 859 aaKnown RBP7.95□□□□□ -1.14
LIMA1-213ENST00000552720 RASA4BC9J798 803 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 POC1B-GALNT4F8VUJ3 575 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 IGF2BP3O00425 579 aaKnown RBP eCLIP7.95□□□□□ -1.14
LIMA1-213ENST00000552720 RASA4O43374 803 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 EXTL3O43909 919 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 PEX10O60683 326 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 GSTA1P08263 222 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 KRT16P08779 473 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 RPSAP08865 295 aaKnown RBP7.95□□□□□ -1.14
LIMA1-213ENST00000552720 ATP4AP20648 1035 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 SLC1A1P43005 524 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 MAGEA4P43358 317 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 ALDH5A1P51649 535 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-213ENST00000552720 ACTR2P61160 394 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 OGDHQ02218 1023 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 GAD2Q05329 585 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 CCNG2Q16589 344 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 ZNF394Q53GI3 561 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 WDR44Q5JSH3 913 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 FKBP1CQ5VVH2 108 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 PRAMEF18Q5VWM3 479 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 SNRNP48Q6IEG0 339 aaKnown RBP7.95□□□□□ -1.14
LIMA1-213ENST00000552720 MFSD7Q6UXD7 560 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 ENOSF1Q7L5Y1 443 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 SPATA21Q7Z572 469 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 USP37Q86T82 979 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 KIRREL3Q8IZU9 778 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 ABRAQ8N0Z2 381 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 RBBP8NLQ8NC74 664 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-213ENST00000552720 SLC17A8Q8NDX2 589 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 ASAP3Q8TDY4 903 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 LPAR1Q92633 364 aa7.95□□□□□ -1.14
LIMA1-213ENST00000552720 STAMBPL1Q96FJ0 436 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms