RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 CTDNEP1O95476 244 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 ATP6V1B1P15313 513 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 SPRP35270 261 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-212ENST00000546744 CLK1P49759 484 aaKnown RBP13.41□□□□□ -0.26
PTCH1-212ENST00000546744 ALDH5A1P51649 535 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-212ENST00000546744 HERVK_113P62684 666 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 ZNF844Q08AG5 666 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 TNFAIP1Q13829 316 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 KLHDC7AQ5VTJ3 777 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 TMC3Q7Z5M5 1100 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 CCNYL1Q8N7R7 359 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 COA7Q96BR5 231 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 MED10Q9BTT4 135 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 KLHL25Q9H0H3 589 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 CD209Q9NNX6 404 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 TBC1D22BQ9NU19 505 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 KLHL8Q9P2G9 620 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-212ENST00000546744 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-212ENST00000546744 TMEM247A6NEH6 219 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 NBPF26B4DH59 902 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 GZMAP12544 262 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 NBPF15Q8N660 670 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 NRDE2Q9H7Z3 1164 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 ZWILCHQ9H900 591 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 NGRNQ9NPE2 291 aaKnown RBP13.41□□□□□ -0.26
PTCH1-212ENST00000546744 KIF17Q9P2E2 1029 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 MEIS1O00470 390 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 AREL1O15033 823 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 ENO3P13929 434 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-212ENST00000546744 SDC4P31431 198 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 STIP1P31948 543 aaKnown RBP13.41□□□□□ -0.26
PTCH1-212ENST00000546744 RAB14P61106 215 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 DAB2P98082 770 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 STK4Q13043 487 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 SENP7Q9BQF6 1050 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 GORASP1Q9BQQ3 440 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 ADNPQ9H2P0 1102 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 LRRC4Q9HBW1 653 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 SLC12A6Q9UHW9 1150 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 HERC5Q9UII4 1024 aaKnown RBP13.41□□□□□ -0.26
PTCH1-212ENST00000546744 CCNL1Q9UK58 526 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-212ENST00000546744 CDYLQ9Y232 598 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 FIS1Q9Y3D6 152 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 CCDC195A0A1B0GUA6 201 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 GTPBP10A4D1E9 387 aaKnown RBP13.41□□□□□ -0.26
PTCH1-212ENST00000546744 GOLGA8IPA6NC78 632 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 SNX3O60493 162 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 GNA15P30679 374 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 ITKQ08881 620 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 SYDE2Q5VT97 1194 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 TRAF7Q6Q0C0 670 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 TSPAN17Q96FV3 270 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 SOX13Q9UN79 622 aa13.41□□□□□ -0.26
PTCH1-212ENST00000546744 FAM237AA0A1B0GTK4 181 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 K7ERI5 159 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 PSTPIP1O43586 416 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 GLRA3O75311 464 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 UNC5CO95185 931 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 SRGAP2CP0DJJ0 459 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 EIF3EP60228 445 aaKnown RBP13.4□□□□□ -0.26
PTCH1-212ENST00000546744 STILQ15468 1287 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 FAM182BQ5T319 152 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 USP17L2Q6R6M4 530 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 LPCAT2Q7L5N7 544 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 ARID3BQ8IVW6 561 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-212ENST00000546744 KLHL23Q8NBE8 558 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 DLG3Q92796 817 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 LACRTQ9GZZ8 138 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 AURKCQ9UQB9 309 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 RIMBP2O15034 1052 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 CLDN3O15551 220 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 KLHL41O60662 606 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 SHOX2O60902 331 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-212ENST00000546744 PSAPP07602 524 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 WEE2P0C1S8 567 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 PMLP29590 882 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 SFNP31947 248 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 PEX5P50542 639 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 ILF2Q12905 390 aaKnown RBP13.4□□□□□ -0.26
PTCH1-212ENST00000546744 LBRQ14739 615 aaKnown RBP13.4□□□□□ -0.26
PTCH1-212ENST00000546744 PDIA6Q15084 440 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 LACTB2Q53H82 288 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-212ENST00000546744 ERMARDQ5T6L9 678 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 TTC27Q6P3X3 843 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 C3orf62Q6ZUJ4 267 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 RFX8Q6ZV50 586 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 DDX5P17844 614 aaKnown RBP13.4□□□□□ -0.26
PTCH1-212ENST00000546744 COMTP21964 271 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 GSTT1P30711 240 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 FXR2P51116 673 aaKnown RBP eCLIP13.4□□□□□ -0.26
PTCH1-212ENST00000546744 GRM1Q13255 1194 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 STX19Q8N4C7 294 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 SEPT8Q92599 483 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 RGPD1P0DJD0 1748 aa13.4□□□□□ -0.26
PTCH1-212ENST00000546744 A0A087WXM4 84 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 GSG1L2A8MUP6 293 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 GNPATO15228 680 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 GLI1P08151 1106 aa13.39□□□□□ -0.27
PTCH1-212ENST00000546744 PURAQ00577 322 aaKnown RBP13.39□□□□□ -0.27
PTCH1-212ENST00000546744 MCL1Q07820 350 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms