RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 CCDC163A0A0D9SF12 145 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 MYBPHLA2RUH7 354 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 BHMG1C9JSJ3 638 aaPredicted RBP5.29□□□□□ -1.56
LIMS1-214ENST00000542845 J3QKU1 62 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 CHADO15335 359 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 ARHGAP6O43182 974 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 PRC1O43663 620 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 GAS7O60861 476 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 AKAP3O75969 853 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 C1QL1O75973 258 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 SEC24AO95486 1093 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 ABL1P00519 1130 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 CFIP05156 583 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 CYP21A2P08686 494 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 ENGP17813 658 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 IGFBP6P24592 240 aaPredicted RBP5.29□□□□□ -1.56
LIMS1-214ENST00000542845 SERPINB4P48594 390 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 NPEPPSP55786 919 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 ANTXR2P58335 489 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 MCCD1P59942 119 aaPredicted RBP5.29□□□□□ -1.56
LIMS1-214ENST00000542845 LAMTOR4Q0VGL1 99 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 GRSF1Q12849 480 aaKnown RBP eCLIP5.29□□□□□ -1.56
LIMS1-214ENST00000542845 DPYDQ12882 1025 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 GRIK3Q13003 919 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 AP3B2Q13367 1082 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 CCINQ13939 588 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 NOTUMQ6P988 496 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 PDXDC1Q6P996 788 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 C1orf228Q6PIY5 440 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 GPR65Q8IYL9 337 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 SYNPOQ8N3V7 929 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 HDDC3Q8N4P3 179 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 CAMKK1Q8N5S9 505 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 RNF149Q8NC42 400 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 TTC16Q8NEE8 873 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 PIP4K2CQ8TBX8 421 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 RSPRY1Q96DX4 576 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 UBL7Q96S82 380 aaPredicted RBP5.29□□□□□ -1.56
LIMS1-214ENST00000542845 TMEM209Q96SK2 561 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 MAP3K14Q99558 947 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 TEKT3Q9BXF9 490 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 NIFKQ9BYG3 293 aaKnown RBP5.29□□□□□ -1.56
LIMS1-214ENST00000542845 LNPKQ9C0E8 428 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 CSRNP2Q9H175 543 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 DNAAF2Q9NVR5 837 aaKnown RBP5.29□□□□□ -1.56
LIMS1-214ENST00000542845 MBD1Q9UIS9 605 aaPredicted RBP5.29□□□□□ -1.56
LIMS1-214ENST00000542845 GIT1Q9Y2X7 761 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 V9GY48 417 aaPredicted RBP5.29□□□□□ -1.56
LIMS1-214ENST00000542845 DMXL2Q8TDJ6 3036 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 PLXNB3Q9ULL4 1909 aa5.29□□□□□ -1.56
LIMS1-214ENST00000542845 ASH1LQ9NR48 2969 aaKnown RBP5.28□□□□□ -1.56
LIMS1-214ENST00000542845 F5P12259 2224 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 ATXN2Q99700 1313 aaKnown RBP5.28□□□□□ -1.56
LIMS1-214ENST00000542845 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 IGKV6-21A0A0C4DH24 114 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 CCDC194A0A1B0GVG4 234 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 A0A1W2PRU2 124 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 FAM221BA6H8Z2 402 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 HIP1O00291 1037 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 ARNTLO00327 626 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 ADAMTS3O15072 1205 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 MSH4O15457 936 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 TSPAN1O60635 241 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 PRMT3O60678 531 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 EGFP01133 1207 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 PRKCBP05771 671 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 THP07101 528 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 CYP3A4P08684 503 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 POU2F2P09086 479 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 U2AF2P26368 475 aaKnown RBP eCLIP5.28□□□□□ -1.56
LIMS1-214ENST00000542845 TKTP29401 623 aaKnown RBP5.28□□□□□ -1.56
LIMS1-214ENST00000542845 SFNP31947 248 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 BRCC3P46736 316 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 JAK3P52333 1124 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 MLLT6P55198 1093 aaPredicted RBP5.28□□□□□ -1.56
LIMS1-214ENST00000542845 SETQ01105 290 aaPredicted RBP5.28□□□□□ -1.56
LIMS1-214ENST00000542845 ROR1Q01973 937 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 PTH1RQ03431 593 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 CYP4F3Q08477 520 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 SPIRE1Q08AE8 756 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 TWF1Q12792 350 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 LMAN2Q12907 356 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 ELAVL2Q12926 359 aaKnown RBP5.28□□□□□ -1.56
LIMS1-214ENST00000542845 TUSC3Q13454 348 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 KARSQ15046 597 aaKnown RBP5.28□□□□□ -1.56
LIMS1-214ENST00000542845 TRIP6Q15654 476 aaKnown RBP5.28□□□□□ -1.56
LIMS1-214ENST00000542845 MAP7D1Q3KQU3 841 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 MSS51Q4VC12 460 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 USP39Q53GS9 565 aaKnown RBP5.28□□□□□ -1.56
LIMS1-214ENST00000542845 STXBP5Q5T5C0 1151 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 LRCH2Q5VUJ6 765 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.28□□□□□ -1.56
LIMS1-214ENST00000542845 SYNE3Q6ZMZ3 975 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 ANO5Q75V66 913 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 RAB44Q7Z6P3 723 aaPredicted RBP5.28□□□□□ -1.56
LIMS1-214ENST00000542845 MICU3Q86XE3 530 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 TICAM2Q86XR7 235 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 MARCH9Q86YJ5 346 aa5.28□□□□□ -1.56
LIMS1-214ENST00000542845 ARID3BQ8IVW6 561 aaPredicted RBP5.28□□□□□ -1.56
LIMS1-214ENST00000542845 TMEFF1Q8IYR6 380 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms