RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 C4orf19Q8IY42 314 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 VPS52Q8N1B4 723 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 MYCT1Q8N699 235 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 ANKRD49Q8WVL7 239 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.49□□□□□ -1.055e-7■■■■■ 62.3
PDLIM5-221ENST00000542407 PPP1R14BQ96C90 147 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 UROC1Q96N76 676 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 ELP3Q9H9T3 547 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 PCDHA13Q9Y5I0 950 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 CSADQ9Y600 493 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 DOCK5Q9H7D0 1870 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 NFASCO94856 1347 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 TMEM150BA6NC51 233 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 A8MUI8 341 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 ZNF263O14978 683 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 SLC16A3O15427 465 aaKnown RBP8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 AKAP3O75969 853 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 SFNP31947 248 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 EPHX2P34913 555 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 HSD17B3P37058 310 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 IREB2P48200 963 aaKnown RBP8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 TUFMP49411 452 aaKnown RBP8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 FSTL1Q12841 308 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 TAF11Q15544 211 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 ZNF746Q6NUN9 644 aaPredicted RBP8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 CRELD2Q6UXH1 353 aaPredicted RBP8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 FRMD5Q7Z6J6 570 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 DDX42Q86XP3 938 aaKnown RBP eCLIP8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 RIOX2Q8IUF8 465 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 KIF2BQ8N4N8 673 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 TTC39CQ8N584 583 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 ESX1Q8N693 406 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 CHST13Q8NET6 341 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 RDM1Q8NG50 284 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 RUBCNQ92622 972 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 ASIC4Q96FT7 647 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 R3HDMLQ9H3Y0 253 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 GDF3Q9NR23 364 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 ZFATQ9P243 1243 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 SFMBT1Q9UHJ3 866 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 ACAD8Q9UKU7 415 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 GMEB1Q9Y692 573 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 SRCAPQ6ZRS2 3230 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 ARHGEF35A5YM69 484 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 WDR64B1ANS9 1081 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 SPATA31C2B4DYI2 1134 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 CALUO43852 315 aaPredicted RBP8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 LGR5O75473 907 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 NR3C1P04150 777 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 PDHA1P08559 390 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 YWHABP31946 246 aaKnown RBP8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 POLR2FP61218 127 aaKnown RBP8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 LBRQ14739 615 aaKnown RBP8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 RSPH3Q86UC2 560 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 ERICH1Q86X53 443 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 KSR1Q8IVT5 923 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 CD302Q8IX05 232 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 NR1H4Q96RI1 486 aaPredicted RBP8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 ELAC2Q9BQ52 826 aaKnown RBP8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 SELENOSQ9BQE4 189 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 MOV10L1Q9BXT6 1211 aaKnown RBP8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 UBE2OQ9C0C9 1292 aaKnown RBP8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 DMAC2Q9NW81 257 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 SLC12A6Q9UHW9 1150 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 USTQ9Y2C2 406 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 TMEM247A6NEH6 219 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 CETN3O15182 167 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 CD53P19397 219 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 DRD4P21917 467 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 CCNCP24863 283 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 CASP4P49662 377 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 PSMC5P62195 406 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 PLS1Q14651 629 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 KRT71Q3SY84 523 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 C10orf76Q5T2E6 689 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 PHLDB3Q6NSJ2 640 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 ERO1BQ86YB8 467 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 DNERQ8NFT8 737 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 CCHCR1Q8TD31 782 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 TMEM174Q8WUU8 243 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 CHMP6Q96FZ7 201 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 OTUD5Q96G74 571 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 FAM207AQ9NSI2 230 aaPredicted RBP8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 DKK3Q9UBP4 350 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 PACSIN2Q9UNF0 486 aaPredicted RBP8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 PLAGL2Q9UPG8 496 aa8.48□□□□□ -1.05
PDLIM5-221ENST00000542407 MYH11P35749 1972 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 DPPA5A6NC42 116 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 SMIM23A6NLE4 172 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 H0Y3Z8 333 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 CXCL11O14625 94 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 ZNF862O60290 1169 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 FTCDO95954 541 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 VIMP08670 466 aaKnown RBP8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 MAPTP10636 758 aaKnown RBP8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 GHRP10912 638 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 EDNRBP24530 442 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 GJA5P36382 358 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 MAGEA1P43355 309 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 TUBA1BP68363 451 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms