RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 GJB1P08034 283 aa18.3■□□□□ 0.52
SPIDR-227ENST00000541342 GTF2H1P32780 548 aa18.3■□□□□ 0.52
SPIDR-227ENST00000541342 ADCYAP1R1P41586 468 aa18.3■□□□□ 0.52
SPIDR-227ENST00000541342 GPC3P51654 580 aa18.3■□□□□ 0.52
SPIDR-227ENST00000541342 DENND2CQ68D51 928 aa18.3■□□□□ 0.52
SPIDR-227ENST00000541342 ZSWIM1Q9BR11 485 aa18.3■□□□□ 0.52
SPIDR-227ENST00000541342 KDM4CQ9H3R0 1056 aa18.3■□□□□ 0.52
SPIDR-227ENST00000541342 ANKFY1Q9P2R3 1169 aa18.3■□□□□ 0.52
SPIDR-227ENST00000541342 TRPC6Q9Y210 931 aa18.3■□□□□ 0.52
SPIDR-227ENST00000541342 ADGRA2Q96PE1 1338 aa18.3■□□□□ 0.52
SPIDR-227ENST00000541342 SMIM23A6NLE4 172 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 FTLP02792 175 aaPredicted RBP18.29■□□□□ 0.52
SPIDR-227ENST00000541342 CLDN10P78369 228 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 TNFAIP8L3Q5GJ75 292 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 LMBRD2Q68DH5 695 aaPredicted RBP18.29■□□□□ 0.52
SPIDR-227ENST00000541342 CDCA2Q69YH5 1023 aaPredicted RBP18.29■□□□□ 0.52
SPIDR-227ENST00000541342 ZNF467Q7Z7K2 595 aaPredicted RBP18.29■□□□□ 0.52
SPIDR-227ENST00000541342 PARP9Q8IXQ6 854 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 EPS8L3Q8TE67 593 aaKnown RBP18.29■□□□□ 0.52
SPIDR-227ENST00000541342 SGSM3Q96HU1 749 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 PTPRJQ12913 1337 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 A0A0B4J269 797 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 SRGAP2CP0DJJ0 459 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 SLC26A2P50443 739 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 ENPEPQ07075 957 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 FAM110CQ1W6H9 321 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 C15orf39Q6ZRI6 1047 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 PIGWQ7Z7B1 504 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 FBXL13Q8NEE6 735 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 HELQQ8TDG4 1101 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 RAB20Q9NX57 234 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 MSCO60682 206 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 FGFR4P22455 802 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 PSMD6Q15008 389 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 TCEAL1Q15170 157 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 RHOT2Q8IXI1 618 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 PPM1KQ8N3J5 372 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 CD101Q93033 1021 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 PCDHB18PQ96TA0 734 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 KIAA1586Q9HCI6 787 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 TPX2Q9ULW0 747 aaKnown RBP18.29■□□□□ 0.52
SPIDR-227ENST00000541342 TRPM7Q96QT4 1865 aa18.29■□□□□ 0.52
SPIDR-227ENST00000541342 TLDC2A0PJX2 215 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 ATMINO43313 823 aaPredicted RBP18.28■□□□□ 0.52
SPIDR-227ENST00000541342 ITGBL1O95965 494 aaPredicted RBP18.28■□□□□ 0.52
SPIDR-227ENST00000541342 SF3A3Q12874 501 aaKnown RBP eCLIP18.28■□□□□ 0.529e-19■■■■■ 36
SPIDR-227ENST00000541342 LAMC2Q13753 1193 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 UHMK1Q8TAS1 419 aaKnown RBP18.28■□□□□ 0.52
SPIDR-227ENST00000541342 MAML3Q96JK9 1138 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 MSTO1Q9BUK6 570 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 CTTNBP2NLQ9P2B4 639 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 TP73O15350 636 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 PYGMP11217 842 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 CHRNA3P32297 505 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 MAP2K2P36507 400 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 SIX1Q15475 284 aaPredicted RBP18.28■□□□□ 0.52
SPIDR-227ENST00000541342 SEZ6Q53EL9 994 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 SLFN12LQ6IEE8 588 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 USP37Q86T82 979 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 DPP9Q86TI2 863 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 GPATCH11Q8N954 259 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 RNF149Q8NC42 400 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 TCP11Q8WWU5 503 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 ZNF668Q96K58 619 aaPredicted RBP18.28■□□□□ 0.52
SPIDR-227ENST00000541342 SELENOSQ9BQE4 189 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.28■□□□□ 0.527e-6■■■■□ 20.5
SPIDR-227ENST00000541342 DOCK3Q8IZD9 2030 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 TMEM110-MUSTN1A8MSY1 372 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 GAS2O43903 313 aaKnown RBP18.28■□□□□ 0.52
SPIDR-227ENST00000541342 HBP1O60381 514 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 LGALS2P05162 132 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 COMTP21964 271 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 PREPLQ4J6C6 727 aaPredicted RBP18.28■□□□□ 0.52
SPIDR-227ENST00000541342 WLSQ5T9L3 541 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 LRRC34Q8IZ02 419 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 PI4K2AQ9BTU6 479 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 ACP6Q9NPH0 428 aa18.28■□□□□ 0.52
SPIDR-227ENST00000541342 DNAJC8O75937 253 aaPredicted RBP18.27■□□□□ 0.52
SPIDR-227ENST00000541342 GH1P01241 217 aa18.27■□□□□ 0.52
SPIDR-227ENST00000541342 CCDC172P0C7W6 258 aa18.27■□□□□ 0.52
SPIDR-227ENST00000541342 GHRP10912 638 aa18.27■□□□□ 0.52
SPIDR-227ENST00000541342 CHRNB2P17787 502 aa18.27■□□□□ 0.52
SPIDR-227ENST00000541342 MXD4Q14582 209 aaPredicted RBP18.27■□□□□ 0.52
SPIDR-227ENST00000541342 CCDC137Q6PK04 289 aaKnown RBP18.27■□□□□ 0.52
SPIDR-227ENST00000541342 RHPN2Q8IUC4 686 aa18.27■□□□□ 0.52
SPIDR-227ENST00000541342 FMNL3Q8IVF7 1028 aa18.27■□□□□ 0.52
SPIDR-227ENST00000541342 FAM71AQ8IYT1 594 aa18.27■□□□□ 0.52
SPIDR-227ENST00000541342 NPLOC4Q8TAT6 608 aa18.27■□□□□ 0.52
SPIDR-227ENST00000541342 AFG1LQ8WV93 481 aa18.27■□□□□ 0.52
SPIDR-227ENST00000541342 ERAP1Q9NZ08 941 aa18.27■□□□□ 0.52
SPIDR-227ENST00000541342 CCT8L1PA6NM43 557 aa18.27■□□□□ 0.51
SPIDR-227ENST00000541342 MIF4GDA9UHW6 222 aaKnown RBP18.27■□□□□ 0.51
SPIDR-227ENST00000541342 CLCN3P51790 818 aa18.27■□□□□ 0.51
SPIDR-227ENST00000541342 HUNKP57058 714 aa18.27■□□□□ 0.51
SPIDR-227ENST00000541342 ZNF568Q3ZCX4 644 aa18.27■□□□□ 0.51
SPIDR-227ENST00000541342 PLEKHH3Q7Z736 793 aa18.27■□□□□ 0.51
SPIDR-227ENST00000541342 RPUSD2Q8IZ73 545 aaKnown RBP18.27■□□□□ 0.51
SPIDR-227ENST00000541342 PPTC7Q8NI37 304 aa18.27■□□□□ 0.51
SPIDR-227ENST00000541342 P3H4Q92791 437 aa18.27■□□□□ 0.51
SPIDR-227ENST00000541342 PRMT1Q99873 361 aaKnown RBP18.27■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms