RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 ASB7Q9H672 318 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 ABCB6Q9NP58 842 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 KLK14Q9P0G3 267 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 AGAP1Q9UPQ3 857 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 PCDHB2Q9Y5E7 798 aa13.13□□□□□ -0.31
AP003559.1-201ENST00000540906 CHRNA1P02708 482 aa13.12□□□□□ -0.31
AP003559.1-201ENST00000540906 HMGCRP04035 888 aa13.12□□□□□ -0.31
AP003559.1-201ENST00000540906 CYP1A1P04798 512 aaPredicted RBP13.12□□□□□ -0.31
AP003559.1-201ENST00000540906 C2orf54Q08AI8 447 aa13.12□□□□□ -0.31
AP003559.1-201ENST00000540906 ACAD10Q6JQN1 1059 aa13.12□□□□□ -0.31
AP003559.1-201ENST00000540906 ALKAL1Q6UXT8 129 aa13.12□□□□□ -0.31
AP003559.1-201ENST00000540906 NT5DC3Q86UY8 548 aa13.12□□□□□ -0.31
AP003559.1-201ENST00000540906 REM2Q8IYK8 340 aaPredicted RBP13.12□□□□□ -0.31
AP003559.1-201ENST00000540906 SMG8Q8ND04 991 aaKnown RBP13.12□□□□□ -0.31
AP003559.1-201ENST00000540906 WHAMMQ8TF30 809 aa13.12□□□□□ -0.31
AP003559.1-201ENST00000540906 UBXN4Q92575 508 aa13.12□□□□□ -0.31
AP003559.1-201ENST00000540906 FAM81BQ96LP2 452 aa13.12□□□□□ -0.31
AP003559.1-201ENST00000540906 IMPG2Q9BZV3 1241 aa13.12□□□□□ -0.31
AP003559.1-201ENST00000540906 FRMPD3Q5JV73 1810 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 MEIS3P2A8K0S8 358 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 KIF4AO95239 1232 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 CYP1A2P05177 515 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 GNAT1P11488 350 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 GPC5P78333 572 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 CDC42EP1Q00587 391 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 MGAT3Q09327 533 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 WDR72Q3MJ13 1102 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 FBXO38Q6PIJ6 1188 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 SERINC5Q86VE9 423 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 NME8Q8N427 588 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 GOLGA1Q92805 767 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 ZNF653Q96CK0 615 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 CCDC94Q9BW85 323 aaPredicted RBP13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 BCO2Q9BYV7 579 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 TRIM7Q9C029 511 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 ANKZF1Q9H8Y5 726 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 SPC25Q9HBM1 224 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 DPP3Q9NY33 737 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 DDX20Q9UHI6 824 aaKnown RBP13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 BRCA2P51587 3418 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 CTAGE15A4D2H0 777 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 THAP12O43422 761 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 CTAGE8P0CG41 777 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 PRLRP16471 622 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 CST5P28325 142 aaPredicted RBP13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 NOMO3P69849 1222 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 POU5F1Q01860 360 aaKnown RBP13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 ZBTB6Q15916 424 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 KYAT1Q16773 422 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 TAF2Q6P1X5 1199 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 DAAM2Q86T65 1068 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 CTAGE6Q86UF2 777 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 CTAGE4Q8IX94 777 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 RAET1EQ8TD07 263 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 ZNF296Q8WUU4 475 aaPredicted RBP13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 ZNF606Q8WXB4 792 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 PNKPQ96T60 521 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 SENP6Q9GZR1 1112 aaPredicted RBP13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 ELOVL4Q9GZR5 314 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 AGO3Q9H9G7 860 aaKnown RBP13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 RNF216Q9NWF9 866 aaPredicted RBP13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 WBP1LQ9NX94 342 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 CTTNBP2NLQ9P2B4 639 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 C2CD2Q9Y426 696 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 NME7Q9Y5B8 376 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 TRPV2Q9Y5S1 764 aa13.11□□□□□ -0.31
AP003559.1-201ENST00000540906 TMEM110-MUSTN1A8MSY1 372 aa13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 DDX3YO15523 660 aaKnown RBP13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 GJB6O95452 261 aa13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 INHAP05111 366 aa13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 RNASE9P60153 205 aaKnown RBP13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 MRPS25P82663 173 aaKnown RBP13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 SOX4Q06945 474 aaPredicted RBP13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 PTP4A2Q12974 167 aa13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 TCEAL1Q15170 157 aa13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 ZNF667Q5HYK9 610 aa13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 MON1BQ7L1V2 547 aa13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 MCOLN2Q8IZK6 566 aa13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 HPDLQ96IR7 371 aa13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 NUP85Q9BW27 656 aa13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 TRMT13Q9NUP7 481 aaKnown RBP13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 IPPQ9Y573 584 aa13.1□□□□□ -0.31
AP003559.1-201ENST00000540906 RHOXF2BP0C7M4 288 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 H2AFXP16104 143 aaPredicted RBP13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 TCP1P17987 556 aaKnown RBP13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 RRM1P23921 792 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 IGFBP6P24592 240 aaPredicted RBP13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 AXLP30530 894 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 MARCKSL1P49006 195 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 RAD23BP54727 409 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 HADHBP55084 474 aaKnown RBP13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 BPIFB4P59827 614 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 CENPCQ03188 943 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 RPS6KA1Q15418 735 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 DCAF12L1Q5VU92 463 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 LHX8Q68G74 356 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 PEX26Q7Z412 305 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 SESTD1Q86VW0 696 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 ZNF677Q86XU0 584 aa13.09□□□□□ -0.31
AP003559.1-201ENST00000540906 WDTC1Q8N5D0 677 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms