RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 TMC7Q7Z402 723 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 CABP7Q86V35 215 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 RELL1Q8IUW5 271 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 RHOT2Q8IXI1 618 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 CCDC105Q8IYK2 499 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 TTC5Q8N0Z6 440 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 LZTR1Q8N653 840 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 PRELID2Q8N945 189 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 MAML1Q92585 1016 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 RNF41Q9H4P4 317 aaPredicted RBP13.1□□□□□ -0.31
USP3-203ENST00000538686 ZNF287Q9HBT7 754 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 LGR6Q9HBX8 967 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 GNPTGQ9UJJ9 305 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 AMOTL2Q9Y2J4 779 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 A0A087WZG4 1122 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 B2RBV5 119 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 ZNF701M0R085 212 aaPredicted RBP13.09□□□□□ -0.31
USP3-203ENST00000538686 APOEP02649 317 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 TMEM253P0C7T8 217 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 CALM1P0DP23 149 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 CALM2P0DP24 149 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 CALM3P0DP25 149 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 COILP38432 576 aaPredicted RBP13.09□□□□□ -0.31
USP3-203ENST00000538686 HSPA13P48723 471 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 ENTPD1P49961 510 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 PPATQ06203 517 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 CYTH1Q15438 398 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 PTPROQ16827 1216 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 TXNRD1Q16881 649 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 SEL1L2Q5TEA6 688 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 SPOPLQ6IQ16 392 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 RHBDF2Q6PJF5 856 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 C12orf50Q8NA57 414 aaPredicted RBP13.09□□□□□ -0.31
USP3-203ENST00000538686 CATSPER1Q8NEC5 780 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 CTRCQ99895 268 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 TRNAU1APQ9NX07 287 aaKnown RBP13.09□□□□□ -0.31
USP3-203ENST00000538686 DYTNA2CJ06 578 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 USP1O94782 785 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 PMLP29590 882 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 HOXC9P31274 260 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 MAN1A1P33908 653 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 FUT2Q10981 343 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 UBE4AQ14139 1066 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 E2F2Q14209 437 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 PDIA6Q15084 440 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 KCTD21Q4G0X4 260 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 HERC4Q5GLZ8 1057 aaPredicted RBP13.09□□□□□ -0.31
USP3-203ENST00000538686 CMTR1Q8N1G2 835 aaKnown RBP13.09□□□□□ -0.31
USP3-203ENST00000538686 CENPSQ8N2Z9 138 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 SPOCK2Q92563 424 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 CCDC138Q96M89 665 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 SENP3Q9H4L4 574 aaPredicted RBP13.09□□□□□ -0.31
USP3-203ENST00000538686 C10orf88Q9H8K7 445 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 AAASQ9NRG9 546 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 RABGEF1Q9UJ41 708 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 POLIQ9UNA4 740 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 PLA2G4CQ9UP65 541 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 DOLKQ9UPQ8 538 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 SCINQ9Y6U3 715 aa13.09□□□□□ -0.31
USP3-203ENST00000538686 MYCLP1P12525 358 aaPredicted RBP13.08□□□□□ -0.32
USP3-203ENST00000538686 KRT4P19013 534 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 PLCG1P19174 1290 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 SNAPC2Q13487 334 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 RASA2Q15283 850 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 TMED2Q15363 201 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 EFHC1Q5JVL4 640 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 FAM209AQ5JX71 171 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 FBXL19Q6PCT2 694 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 CYP2U1Q7Z449 544 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 ANKRD13BQ86YJ7 626 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 TMEM126BQ8IUX1 230 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 SNF8Q96H20 258 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 PRPF18Q99633 342 aaKnown RBP13.08□□□□□ -0.32
USP3-203ENST00000538686 NUF2Q9BZD4 464 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 FOXP3Q9BZS1 431 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 TRABDQ9H4I3 376 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 PSTPIP2Q9H939 334 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.08□□□□□ -0.321e-6■■■■■ 35.6
USP3-203ENST00000538686 KLHL3Q9UH77 587 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 TBK1Q9UHD2 729 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 SLC7A8Q9UHI5 535 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 KMOO15229 486 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 MTRF1O75570 445 aaKnown RBP13.08□□□□□ -0.32
USP3-203ENST00000538686 FAM58BPP0C7Q3 252 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 ZNF23P17027 643 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 COPB2P35606 906 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 ZAP70P43403 619 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 C21orf59P57076 290 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 DLGAP5Q15398 846 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 PHKG1Q16816 387 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 ELMSAN1Q6PJG2 1045 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 CLEC4GQ6UXB4 293 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 LPCAT2Q7L5N7 544 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 KRT27Q7Z3Y8 459 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 ZNF804AQ7Z570 1209 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 ADAT2Q7Z6V5 191 aaKnown RBP13.08□□□□□ -0.32
USP3-203ENST00000538686 BBOF1Q8ND07 529 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 VPS45Q9NRW7 570 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 NINJ2Q9NZG7 142 aa13.08□□□□□ -0.32
USP3-203ENST00000538686 KANSL3Q9P2N6 904 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms