RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 RAPGEF4Q8WZA2 1011 aa7.14□□□□□ -1.27
USP28-207ENST00000538475 TTC9Q92623 222 aa7.14□□□□□ -1.27
USP28-207ENST00000538475 PRCCQ92733 491 aaPredicted RBP7.14□□□□□ -1.27
USP28-207ENST00000538475 ARHGEF2Q92974 986 aaKnown RBP7.14□□□□□ -1.27
USP28-207ENST00000538475 ART4Q93070 314 aa7.14□□□□□ -1.27
USP28-207ENST00000538475 RBM17Q96I25 401 aaKnown RBP7.14□□□□□ -1.27
USP28-207ENST00000538475 ROBO3Q96MS0 1386 aa7.14□□□□□ -1.27
USP28-207ENST00000538475 CATSPER2Q96P56 530 aa7.14□□□□□ -1.27
USP28-207ENST00000538475 PASKQ96RG2 1323 aa7.14□□□□□ -1.27
USP28-207ENST00000538475 RPS6KC1Q96S38 1066 aa7.14□□□□□ -1.27
USP28-207ENST00000538475 SPATA16Q9BXB7 569 aa7.14□□□□□ -1.27
USP28-207ENST00000538475 GANQ9H2C0 597 aa7.14□□□□□ -1.27
USP28-207ENST00000538475 SYNCQ9H7C4 482 aa7.14□□□□□ -1.27
USP28-207ENST00000538475 SSU72Q9NP77 194 aaKnown RBP7.14□□□□□ -1.27
USP28-207ENST00000538475 PIH1D3Q9NQM4 214 aaKnown RBP7.14□□□□□ -1.27
USP28-207ENST00000538475 PCMTD2Q9NV79 361 aa7.14□□□□□ -1.27
USP28-207ENST00000538475 FGFR1OP2Q9NVK5 253 aa7.14□□□□□ -1.27
USP28-207ENST00000538475 ABI2Q9NYB9 513 aaPredicted RBP7.14□□□□□ -1.27
USP28-207ENST00000538475 NR2E3Q9Y5X4 410 aa7.14□□□□□ -1.27
USP28-207ENST00000538475 CACNA1SQ13698 1873 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 RBBP6Q7Z6E9 1792 aaKnown RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 TNS3Q68CZ2 1445 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 UMODL1Q5DID0 1318 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 SPATA31A3Q5VYP0 1347 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 RPTORQ8N122 1335 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 TMEM120BA0PK00 339 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 UBE2Q2LH0YL09 131 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 hCG_1984214I3L0E3 225 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 EPHB6O15197 1021 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 CDH16O75309 829 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 MBD4O95243 580 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 PDE8BO95263 885 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 PYGLP06737 847 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 ABHD2P08910 425 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 OR52Z1P0C646 297 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 ELNP15502 786 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 ZFXP17010 805 aaPredicted RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 PLCG1P19174 1290 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 ITIH2P19823 946 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 KCNA3P22001 575 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 CTNNA2P26232 953 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 TPP2P29144 1249 aaPredicted RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 RGS2P41220 211 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 CDK7P50613 346 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 IRX4P78413 519 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 PPATQ06203 517 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 SPIDRQ14159 915 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 STAT4Q14765 748 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 PUM3Q15397 648 aaKnown RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 LIN52Q52LA3 116 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 HSP90AA5PQ58FG0 334 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 METTL24Q5JXM2 366 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 RASIP1Q5U651 963 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 GDF6Q6KF10 455 aaPredicted RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 PDE12Q6L8Q7 609 aaKnown RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 C11orf63Q6NUN7 778 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 ZDHHC24Q6UX98 284 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 C4orf50Q6ZRC1 276 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 RHOT2Q8IXI1 618 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 ST13P4Q8IZP2 240 aaPredicted RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 UBL4BQ8N7F7 174 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 ZNF713Q8N859 430 aaPredicted RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 ZBTB38Q8NAP3 1195 aaPredicted RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 TTLL11Q8NHH1 800 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 UTP4Q969X6 686 aaKnown RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 ZNF653Q96CK0 615 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 SHISA4Q96DD7 197 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 HIC2Q96JB3 615 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 RMDN2Q96LZ7 410 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 TGS1Q96RS0 853 aaKnown RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 MPHOSPH6Q99547 160 aaKnown RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 ZNF184Q99676 751 aaPredicted RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.13□□□□□ -1.27
USP28-207ENST00000538475 LSM14BQ9BX40 385 aaKnown RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 TBC1D10AQ9BXI6 508 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 PITPNM3Q9BZ71 974 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 PUS3Q9BZE2 481 aaKnown RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 ASCC2Q9H1I8 757 aaPredicted RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 BHMT2Q9H2M3 363 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 ELP3Q9H9T3 547 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 NMRK1Q9NWW6 199 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 ZDHHC7Q9NXF8 308 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 PTTG2Q9NZH5 202 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 MTUS1Q9ULD2 1270 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 SMG5Q9UPR3 1016 aaKnown RBP7.13□□□□□ -1.27
USP28-207ENST00000538475 ZNF510Q9Y2H8 683 aa7.13□□□□□ -1.27
USP28-207ENST00000538475 TLDC2A0PJX2 215 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 C9orf172C9J069 976 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 WDR46O15213 610 aaKnown RBP7.12□□□□□ -1.27
USP28-207ENST00000538475 DDX3YO15523 660 aaKnown RBP7.12□□□□□ -1.27
USP28-207ENST00000538475 PRPF4O43172 522 aaKnown RBP eCLIP7.12□□□□□ -1.27
USP28-207ENST00000538475 AP1G1O43747 822 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 ATP9AO75110 1047 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 COBLO75128 1261 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 FAM13AO94988 1023 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 IL1BP01584 269 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 FGGP02679 453 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 FAM200BP0CF97 657 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 HOXD8P13378 290 aaPredicted RBP7.12□□□□□ -1.27
USP28-207ENST00000538475 TAC1P20366 129 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms