RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 INO80B-WBP1J3KQ70 363 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 SOCS7O14512 581 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 EIF3HO15372 352 aaKnown RBP eCLIP7.05□□□□□ -1.28
USP28-206ENST00000538224 C22orf31O95567 290 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 KRT14P02533 472 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 PAEPP09466 180 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 SRGAP2CP0DJJ0 459 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 PYGMP11217 842 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 MMP8P22894 467 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 EIF4BP23588 611 aaKnown RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 RRM1P23921 792 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 MARK3P27448 753 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 ATP5DP30049 168 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 ATICP31939 592 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 CDH5P33151 784 aaPredicted RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 PTPN7P35236 360 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 RDXP35241 583 aaKnown RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 PTGIRP43119 386 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 MARCKSL1P49006 195 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 GTF2A2P52657 109 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 PMS2P54278 862 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 GNGT1P63211 74 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 FKBP1BP68106 108 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 CDC42EP1Q00587 391 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 DHX9Q08211 1270 aaKnown RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 ADCY2Q08462 1091 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 FSTL1Q12841 308 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 MOGSQ13724 837 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 PIGHQ14442 188 aaPredicted RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 PCBP1Q15365 356 aaKnown RBP eCLIP7.05□□□□□ -1.28
USP28-206ENST00000538224 ZNF699Q32M78 642 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 HSDL1Q3SXM5 330 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 ODF2Q5BJF6 829 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 LDLRAD1Q5T700 205 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 LRRC38Q5VT99 294 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 WDR78Q5VTH9 848 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 DENND2CQ68D51 928 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 LMBRD2Q68DH5 695 aaPredicted RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 SPOPLQ6IQ16 392 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 GPAT2Q6NUI2 795 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 DNAJC24Q6P3W2 148 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 ARMCX2Q7L311 632 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 PNMA8AQ86V59 439 aaPredicted RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 RHPN2Q8IUC4 686 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 FBXO16Q8IX29 292 aaPredicted RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 C3orf20Q8ND61 904 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 GPRC5AQ8NFJ5 357 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 OR5B17Q8NGF7 314 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 EXD1Q8NHP7 514 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 PPTC7Q8NI37 304 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 ZNF606Q8WXB4 792 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 PIK3R5Q8WYR1 880 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 C18orf8Q96DM3 657 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 CYFIP2Q96F07 1278 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 HINFPQ9BQA5 517 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 C11orf70Q9BRQ4 267 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 TRIM51Q9BSJ1 452 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 TMEM109Q9BVC6 243 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 TXLNGYQ9BZA5 131 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 CELF4Q9BZC1 486 aaKnown RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 FOXP3Q9BZS1 431 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 INO80BQ9C086 356 aaPredicted RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 FHDC1Q9C0D6 1143 aaPredicted RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 MTMR12Q9C0I1 747 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 DNAI2Q9GZS0 605 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 PABPC3Q9H361 631 aaKnown RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 ASB7Q9H672 318 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 RPF1Q9H9Y2 349 aaKnown RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 CYP3A43Q9HB55 503 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 ERVK-5Q9HDB9 667 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 ZDHHC18Q9NUE0 388 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 DDX56Q9NY93 547 aaKnown RBP7.05□□□□□ -1.28
USP28-206ENST00000538224 WDR35Q9P2L0 1181 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 NUB1Q9Y5A7 615 aa7.05□□□□□ -1.28
USP28-206ENST00000538224 UMODL1Q5DID0 1318 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ATXN2Q99700 1313 aaKnown RBP7.04□□□□□ -1.28
USP28-206ENST00000538224 H0YGN5 161 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ABLIM1O14639 778 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 TLR3O15455 904 aaKnown RBP7.04□□□□□ -1.28
USP28-206ENST00000538224 CAPN15O75808 1086 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 STAU1O95793 577 aaKnown RBP7.04□□□□□ -1.28
USP28-206ENST00000538224 EDN1P05305 212 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 PGK2P07205 417 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 HOXC6P09630 235 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 RARAP10276 462 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 RARGP13631 454 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ITIH2P19823 946 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 IRAK1P51617 712 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 PLTPP55058 493 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 HNRNPH2P55795 449 aaKnown RBP7.04□□□□□ -1.28
USP28-206ENST00000538224 WNT7BP56706 349 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 GSCP56915 257 aaPredicted RBP7.04□□□□□ -1.28
USP28-206ENST00000538224 LACTBP83111 547 aaPredicted RBP7.04□□□□□ -1.28
USP28-206ENST00000538224 TFAMQ00059 246 aaKnown RBP7.04□□□□□ -1.28
USP28-206ENST00000538224 KRT17Q04695 432 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 MBTD1Q05BQ5 628 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ARHGAP1Q07960 439 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 ZNF844Q08AG5 666 aa7.04□□□□□ -1.28
USP28-206ENST00000538224 MKRN4PQ13434 485 aaPredicted RBP7.04□□□□□ -1.28
USP28-206ENST00000538224 PTK6Q13882 451 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms