RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 NCKAP1LP55160 1127 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 GTF2BQ00403 316 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 RNASELQ05823 741 aaKnown RBP12.87□□□□□ -0.35
CLIP1-208ENST00000537004 DLX2Q07687 328 aaPredicted RBP12.87□□□□□ -0.35
CLIP1-208ENST00000537004 MYBPC2Q14324 1141 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 KIFAP3Q92845 792 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 PGBD4Q96DM1 585 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 IFT74Q96LB3 600 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 ZNF558Q96NG5 402 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 GAD1Q99259 594 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 TRIM6Q9C030 488 aaPredicted RBP12.87□□□□□ -0.35
CLIP1-208ENST00000537004 CCDC113Q9H0I3 377 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 NRDE2Q9H7Z3 1164 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 MIOSQ9NXC5 875 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 SSU72P8A0A1W2PR75 194 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 RCCD1A6NED2 376 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 LINC01565O15544 149 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 EXOC3O60645 756 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 SERPING1P05155 500 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 BMP1P13497 986 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 ITGA4P13612 1032 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 AXLP30530 894 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 VAV2P52735 878 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 MAPK8IP2Q13387 824 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-208ENST00000537004 RAPGEF1Q13905 1077 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 PCBP1Q15365 356 aaKnown RBP eCLIP12.86□□□□□ -0.35
CLIP1-208ENST00000537004 MAPK6Q16659 721 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 TDRD12Q587J7 1177 aaKnown RBP12.86□□□□□ -0.35
CLIP1-208ENST00000537004 KLHDC7AQ5VTJ3 777 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 EEF1DP3Q658K8 133 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 MNS1Q8NEH6 495 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 BCL7CQ8WUZ0 217 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-208ENST00000537004 CARD6Q9BX69 1037 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 LACRTQ9GZZ8 138 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 LMAN2LQ9H0V9 348 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 CXCL16Q9H2A7 254 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 PDZD7Q9H5P4 517 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 PRMT7Q9NVM4 692 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-208ENST00000537004 CLDND1Q9NY35 253 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 KLK14Q9P0G3 267 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 GCNT4Q9P109 453 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 CGNQ9P2M7 1197 aaKnown RBP12.86□□□□□ -0.35
CLIP1-208ENST00000537004 COG5Q9UP83 839 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 KIAA1671Q9BY89 1806 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 RALGAPA2Q2PPJ7 1873 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-208ENST00000537004 ARL5CA6NH57 179 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 TISP43B9A030 160 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 UCHL3P15374 230 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 ALDH7A1P49419 539 aaKnown RBP12.86□□□□□ -0.35
CLIP1-208ENST00000537004 SMTNP53814 917 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 DMP1Q13316 513 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-208ENST00000537004 PRPF4BQ13523 1007 aaKnown RBP12.86□□□□□ -0.35
CLIP1-208ENST00000537004 PPP2R5AQ15172 486 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 TMEM132AQ24JP5 1023 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 ASTE1Q2TB18 679 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-208ENST00000537004 PLPP4Q5VZY2 271 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 SLC27A1Q6PCB7 646 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 SLC39A11Q8N1S5 342 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 TMEM174Q8WUU8 243 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 NAPGQ99747 312 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-208ENST00000537004 MRPL9Q9BYD2 267 aaKnown RBP12.86□□□□□ -0.35
CLIP1-208ENST00000537004 C2orf40Q9H1Z8 148 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 TLR9Q9NR96 1032 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 SPG21Q9NZD8 308 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 AIPL1Q9NZN9 384 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 PCDHA13Q9Y5I0 950 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 CNTNAP2Q9UHC6 1331 aa12.86□□□□□ -0.35
CLIP1-208ENST00000537004 HIDE1A8MVS5 230 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 ACKR2O00590 384 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 GALTP07902 379 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 LTBRP36941 435 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 NRIP1P48552 1158 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 SLC11A1P49279 550 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 FMO5P49326 533 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 SCNN1GP51170 649 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 KIF5AQ12840 1032 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 ELF2Q15723 593 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 CLUL1Q15846 466 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 FAM187BQ17R55 369 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 TAS1R3Q7RTX0 852 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 C12orf56Q8IXR9 622 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 EHBP1Q8NDI1 1231 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 TMEM161BQ8NDZ6 487 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 TSGA10Q9BZW7 698 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 PCIF1Q9H4Z3 704 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 SIX2Q9NPC8 291 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 CACNG4Q9UBN1 327 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 FBXL5Q9UKA1 691 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 FHOD1Q9Y613 1164 aa12.85□□□□□ -0.35
CLIP1-208ENST00000537004 F8W810 466 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 K7ERI5 159 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 PLCB3Q01970 1234 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 BFSP1Q12934 665 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 ERCC6LQ2NKX8 1250 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 RDH13Q8NBN7 331 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 GSTCDQ8NEC7 633 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 ADAMTS19Q8TE59 1207 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 AUTS2Q8WXX7 1259 aa12.84□□□□□ -0.35
CLIP1-208ENST00000537004 RABGGTAQ92696 567 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms