RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CLDN10P78369 228 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 CYP24A1Q07973 514 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 CBX2Q14781 532 aaPredicted RBP14.03□□□□□ -0.16
VPS28-216ENST00000533806 PSMD6Q15008 389 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 SURF1Q15526 300 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 NFIL3Q16649 462 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 SPATA31D4Q6ZUB0 917 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 GPR149Q86SP6 731 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 ADHFE1Q8IWW8 467 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 RDH13Q8NBN7 331 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 APPL2Q8NEU8 664 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 PLEKHO2Q8TD55 490 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 CACTINQ8WUQ7 758 aaKnown RBP14.03□□□□□ -0.16
VPS28-216ENST00000533806 ERCC4Q92889 916 aaPredicted RBP14.03□□□□□ -0.16
VPS28-216ENST00000533806 CCDC47Q96A33 483 aaKnown RBP14.03□□□□□ -0.16
VPS28-216ENST00000533806 ZNF707Q96C28 371 aaPredicted RBP14.03□□□□□ -0.16
VPS28-216ENST00000533806 SENP8Q96LD8 212 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 IPO9Q96P70 1041 aaKnown RBP14.03□□□□□ -0.16
VPS28-216ENST00000533806 SFXN1Q9H9B4 322 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 MAN1C1Q9NR34 630 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 FBXL5Q9UKA1 691 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 FBXW11Q9UKB1 542 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 ITGA11Q9UKX5 1188 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 CDY1Q9Y6F8 540 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 ANK1P16157 1881 aa14.02□□□□□ -0.16
VPS28-216ENST00000533806 DLL1O00548 723 aa14.02□□□□□ -0.17
VPS28-216ENST00000533806 KIF20AO95235 890 aa14.02□□□□□ -0.17
VPS28-216ENST00000533806 NR3C1P04150 777 aa14.02□□□□□ -0.17
VPS28-216ENST00000533806 TFAMQ00059 246 aaKnown RBP14.02□□□□□ -0.17
VPS28-216ENST00000533806 RARS2Q5T160 578 aaKnown RBP14.02□□□□□ -0.17
VPS28-216ENST00000533806 ZNF658Q5TYW1 1059 aaPredicted RBP14.02□□□□□ -0.17
VPS28-216ENST00000533806 C15orf39Q6ZRI6 1047 aa14.02□□□□□ -0.17
VPS28-216ENST00000533806 LIMS2Q7Z4I7 341 aa14.02□□□□□ -0.17
VPS28-216ENST00000533806 WDR49Q8IV35 697 aa14.02□□□□□ -0.17
VPS28-216ENST00000533806 GLYCTKQ8IVS8 523 aa14.02□□□□□ -0.17
VPS28-216ENST00000533806 KREMEN2Q8NCW0 462 aa14.02□□□□□ -0.17
VPS28-216ENST00000533806 ZNF516Q92618 1163 aa14.02□□□□□ -0.17
VPS28-216ENST00000533806 APOL5Q9BWW9 433 aa14.02□□□□□ -0.17
VPS28-216ENST00000533806 RMND1Q9NWS8 449 aa14.02□□□□□ -0.17
VPS28-216ENST00000533806 DPP7Q9UHL4 492 aa14.02□□□□□ -0.17
VPS28-216ENST00000533806 MAPK8IP1Q9UQF2 711 aa14.02□□□□□ -0.17
VPS28-216ENST00000533806 TIMM13Q9Y5L4 95 aaPredicted RBP14.02□□□□□ -0.17
VPS28-216ENST00000533806 KPNA7A9QM74 516 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 LOC730098B7Z3J9 87 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 H7C4K7 107 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 EXOC3O60645 756 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 KINO60870 393 aaKnown RBP14.01□□□□□ -0.17
VPS28-216ENST00000533806 PRPF40AO75400 957 aaKnown RBP14.01□□□□□ -0.17
VPS28-216ENST00000533806 RFPL2O75678 378 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 ZMYND10O75800 440 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 SMC2O95347 1197 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 ITGB3P05106 788 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 BMP6P22004 513 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 PRCPP42785 496 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 CASP4P49662 377 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 TAF6P49848 677 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 ROR1Q01973 937 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 DUOXA2Q1HG44 320 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 LMBRD2Q68DH5 695 aaPredicted RBP14.01□□□□□ -0.17
VPS28-216ENST00000533806 TMC5Q6UXY8 1006 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 CYP26C1Q6V0L0 522 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 RTL10Q7L3V2 364 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 SMYD4Q8IYR2 804 aaPredicted RBP14.01□□□□□ -0.17
VPS28-216ENST00000533806 LRRC52Q8N7C0 313 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 ZNF461Q8TAF7 563 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 PARD3BQ8TEW8 1205 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 NOC3LQ8WTT2 800 aaKnown RBP14.01□□□□□ -0.17
VPS28-216ENST00000533806 POP1Q99575 1024 aaKnown RBP14.01□□□□□ -0.17
VPS28-216ENST00000533806 CGRRF1Q99675 332 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 PHF7Q9BWX1 381 aaPredicted RBP14.01□□□□□ -0.17
VPS28-216ENST00000533806 OXCT2Q9BYC2 517 aaPredicted RBP14.01□□□□□ -0.17
VPS28-216ENST00000533806 MTMR12Q9C0I1 747 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 ZDHHC7Q9NXF8 308 aa14.01□□□□□ -0.17
VPS28-216ENST00000533806 CCDC195A0A1B0GUA6 201 aa14□□□□□ -0.17
VPS28-216ENST00000533806 WDR27A2RRH5 827 aa14□□□□□ -0.17
VPS28-216ENST00000533806 MAPK13O15264 365 aa14□□□□□ -0.17
VPS28-216ENST00000533806 WEE2P0C1S8 567 aa14□□□□□ -0.17
VPS28-216ENST00000533806 ATF2P15336 505 aa14□□□□□ -0.17
VPS28-216ENST00000533806 POLR2BP30876 1174 aaKnown RBP14□□□□□ -0.17
VPS28-216ENST00000533806 PNPLA4P41247 253 aa14□□□□□ -0.17
VPS28-216ENST00000533806 MTHFRP42898 656 aa14□□□□□ -0.17
VPS28-216ENST00000533806 YWHAHQ04917 246 aaPredicted RBP14□□□□□ -0.17
VPS28-216ENST00000533806 UVSSAQ2YD98 709 aa14□□□□□ -0.17
VPS28-216ENST00000533806 CTXN3Q4LDR2 81 aa14□□□□□ -0.17
VPS28-216ENST00000533806 C1orf220Q5T0J3 134 aa14□□□□□ -0.17
VPS28-216ENST00000533806 CENPPQ6IPU0 288 aa14□□□□□ -0.17
VPS28-216ENST00000533806 CES5AQ6NT32 575 aa14□□□□□ -0.17
VPS28-216ENST00000533806 DSTYKQ6XUX3 929 aa14□□□□□ -0.17
VPS28-216ENST00000533806 TRAPPC11Q7Z392 1133 aa14□□□□□ -0.17
VPS28-216ENST00000533806 ADSSL1Q8N142 457 aa14□□□□□ -0.17
VPS28-216ENST00000533806 GJD3Q8N144 294 aa14□□□□□ -0.17
VPS28-216ENST00000533806 CSGALNACT2Q8N6G5 542 aa14□□□□□ -0.17
VPS28-216ENST00000533806 SMARCE1Q969G3 411 aa14□□□□□ -0.17
VPS28-216ENST00000533806 NECTIN4Q96NY8 510 aa14□□□□□ -0.17
VPS28-216ENST00000533806 RTP3Q9BQQ7 232 aa14□□□□□ -0.17
VPS28-216ENST00000533806 GTPBP4Q9BZE4 634 aaKnown RBP14□□□□□ -0.17
VPS28-216ENST00000533806 POMKQ9H5K3 350 aa14□□□□□ -0.17
VPS28-216ENST00000533806 GDAP2Q9NXN4 497 aa14□□□□□ -0.17
VPS28-216ENST00000533806 HOOK1Q9UJC3 728 aaKnown RBP14□□□□□ -0.17
VPS28-216ENST00000533806 AGAP1Q9UPQ3 857 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms