RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 AKIP1Q9NQ31 210 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 POGKQ9P215 609 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 CHST2Q9Y4C5 530 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 COL4A3BPQ9Y5P4 624 aa5.17□□□□□ -1.58
CD44-235ENST00000532339 CENPVL1A0A0U1RR11 272 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 GRID2IPA4D2P6 1211 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 TMEM200CA6NKL6 621 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 LEFTY2O00292 366 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 SPATA31D3P0C874 917 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 SOX5P35711 763 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 ID4P47928 161 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 PTTG1IPP53801 180 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 RNASE9P60153 205 aaKnown RBP5.16□□□□□ -1.58
CD44-235ENST00000532339 FAM189BP81408 668 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 STRN3Q13033 797 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 BMT2Q1RMZ1 405 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 GJC2Q5T442 439 aaPredicted RBP5.16□□□□□ -1.58
CD44-235ENST00000532339 ANKS6Q68DC2 871 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 SPATA31D4Q6ZUB0 917 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 ZFP28Q8NHY6 868 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 TFAP2CQ92754 450 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 TMX1Q9H3N1 280 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 CAAP1Q9H8G2 361 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 CYP4F11Q9HBI6 524 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 PCDH12Q9NPG4 1184 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 DPP7Q9UHL4 492 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 MEGF6O75095 1541 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 ANKRD30BQ9BXX2 1392 aa5.16□□□□□ -1.58
CD44-235ENST00000532339 LRRC37A3O60309 1634 aa5.15□□□□□ -1.58
CD44-235ENST00000532339 EEA1Q15075 1411 aa5.15□□□□□ -1.58
CD44-235ENST00000532339 COL6A3P12111 3177 aa5.15□□□□□ -1.58
CD44-235ENST00000532339 hCG_2014768A0A024R1R8 64 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 NCR1O76036 304 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 ZSCAN20P17040 1043 aaPredicted RBP5.15□□□□□ -1.59
CD44-235ENST00000532339 BMP5P22003 454 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 PROZP22891 400 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 MASP1P48740 699 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 FLT3LGP49771 235 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 MRPS9P82933 396 aaKnown RBP5.15□□□□□ -1.59
CD44-235ENST00000532339 CSRP2Q16527 193 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 MST1LQ2TV78 715 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 PRAMEF14Q5SWL7 426 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 FAM180AQ6UWF9 173 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 BTNL9Q6UXG8 535 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 ZNF575Q86XF7 245 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 SYT12Q8IV01 421 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 ZCRB1Q8TBF4 217 aaKnown RBP5.15□□□□□ -1.59
CD44-235ENST00000532339 AUTS2Q8WXX7 1259 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 CEP95Q96GE4 821 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 RRP7BPQ9NSQ0 103 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 EDARQ9UNE0 448 aa5.15□□□□□ -1.59
CD44-235ENST00000532339 NOP58Q9Y2X3 529 aaKnown RBP5.15□□□□□ -1.59
CD44-235ENST00000532339 VIRMAQ69YN4 1812 aaKnown RBP5.14□□□□□ -1.59
CD44-235ENST00000532339 PJA2O43164 708 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 BRINP1O60477 761 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 LPXNO60711 386 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 LMNAP02545 664 aaKnown RBP5.14□□□□□ -1.59
CD44-235ENST00000532339 HLA-DOAP06340 250 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 VIL1P09327 827 aaKnown RBP5.14□□□□□ -1.59
CD44-235ENST00000532339 MTHFD2P13995 350 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 BMPR1AP36894 532 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 USP14P54578 494 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 CDK17Q00537 523 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 BEAN1Q3B7T3 259 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 FAM47AQ5JRC9 791 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 MFSD14BQ5SR56 506 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 HECTD2Q5U5R9 776 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 KRTAP5-3Q6L8H2 238 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 STRA8Q7Z7C7 330 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 ARHGEF19Q8IW93 802 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 UBR7Q8N806 425 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 RNF169Q8NCN4 708 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 GPR156Q8NFN8 814 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 TOR3AQ9H497 397 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 FMN2Q9NZ56 1722 aa5.14□□□□□ -1.59
CD44-235ENST00000532339 COL4A3Q01955 1670 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 ALS2Q96Q42 1657 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 GOLGA8AA7E2F4 631 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 AKR1B10O60218 316 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 NDUFA10O95299 355 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 PTPN7P35236 360 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 ADRA1BP35368 520 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 ZEB1P37275 1124 aaPredicted RBP5.13□□□□□ -1.59
CD44-235ENST00000532339 IGBP1P78318 339 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 MXRA7P84157 204 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 AMPD3Q01432 767 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 FAPQ12884 760 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 COL23A1Q86Y22 540 aaPredicted RBP5.13□□□□□ -1.59
CD44-235ENST00000532339 SUPT20HQ8NEM7 779 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 OR7D4Q8NG98 312 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 GPR150Q8NGU9 434 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 CHAC2Q8WUX2 184 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 RIN2Q8WYP3 895 aaPredicted RBP5.13□□□□□ -1.59
CD44-235ENST00000532339 FATE1Q969F0 183 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 SNX27Q96L92 541 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 SERHL2Q9H4I8 314 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 ANKFY1Q9P2R3 1169 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 DKK2Q9UBU2 259 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 CRYBG1Q9Y4K1 1723 aa5.13□□□□□ -1.59
CD44-235ENST00000532339 CRB1P82279 1406 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms