RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	GIT1	Q9Y2X7	761 aa		6.3	□□□□□ -1.4
CD44-231	ENST00000531110	SOS1	Q07889	1333 aa	Predicted RBP	6.29	□□□□□ -1.4
CD44-231	ENST00000531110	KIF2A	O00139	706 aa	Predicted RBP	6.29	□□□□□ -1.4
CD44-231	ENST00000531110	PJA2	O43164	708 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	XPOT	O43592	962 aa	Known RBP	6.29	□□□□□ -1.4
CD44-231	ENST00000531110	C5AR1	P21730	350 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	GUCY1A2	P33402	732 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	RBM5	P52756	815 aa	Known RBP eCLIP	6.29	□□□□□ -1.4
CD44-231	ENST00000531110	APBA1	Q02410	837 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	EIF2B5	Q13144	721 aa	Known RBP	6.29	□□□□□ -1.4
CD44-231	ENST00000531110	PCBP2	Q15366	365 aa	Known RBP eCLIP	6.29	□□□□□ -1.4
CD44-231	ENST00000531110	CDSN	Q15517	529 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	PARP10	Q53GL7	1025 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	DRICH1	Q6PGQ1	229 aa	Predicted RBP	6.29	□□□□□ -1.4
CD44-231	ENST00000531110	CENPQ	Q7L2Z9	268 aa	Predicted RBP	6.29	□□□□□ -1.4
CD44-231	ENST00000531110	GPRIN1	Q7Z2K8	1008 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	ZNF572	Q7Z3I7	529 aa	Predicted RBP	6.29	□□□□□ -1.4
CD44-231	ENST00000531110	FAM83A	Q86UY5	434 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	ZBTB46	Q86UZ6	589 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	ZNF808	Q8N4W9	903 aa	Predicted RBP	6.29	□□□□□ -1.4
CD44-231	ENST00000531110	VPS37A	Q8NEZ2	397 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	ZNF397	Q8NF99	534 aa	Predicted RBP	6.29	□□□□□ -1.4
CD44-231	ENST00000531110	NUP88	Q99567	741 aa	Predicted RBP	6.29	□□□□□ -1.4
CD44-231	ENST00000531110	MANSC1	Q9H8J5	431 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	HOXC10	Q9NYD6	342 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	TMOD4	Q9NZQ9	345 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	TUBD1	Q9UJT1	453 aa		6.29	□□□□□ -1.4
CD44-231	ENST00000531110	CFAP69	A5D8W1	941 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	CAPN14	A8MX76	684 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	TEX33	O43247	280 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	ALDH1L1	O75891	902 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	GSPT1	P15170	499 aa	Known RBP	6.28	□□□□□ -1.4
CD44-231	ENST00000531110	BDNF	P23560	247 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	CCND1	P24385	295 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	U2AF2	P26368	475 aa	Known RBP eCLIP	6.28	□□□□□ -1.4
CD44-231	ENST00000531110	SREBF1	P36956	1147 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	SLC8A3	P57103	927 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	CCDC15	Q0P6D6	951 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	ACAP2	Q15057	778 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	KLHL40	Q2TBA0	621 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	SLC4A8	Q2Y0W8	1093 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	C4orf46	Q504U0	113 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	FAM47A	Q5JRC9	791 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	ZNF585A	Q6P3V2	769 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	RSPH3	Q86UC2	560 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	SGMS1	Q86VZ5	419 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	TRMT2A	Q8IZ69	625 aa	Known RBP	6.28	□□□□□ -1.4
CD44-231	ENST00000531110	LZIC	Q8WZA0	190 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	PPP1R14B	Q96C90	147 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	EVI5L	Q96CN4	794 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	DHTKD1	Q96HY7	919 aa	Predicted RBP	6.28	□□□□□ -1.4
CD44-231	ENST00000531110	ZNF703	Q9H7S9	590 aa	Predicted RBP	6.28	□□□□□ -1.4
CD44-231	ENST00000531110	PANK3	Q9H999	370 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	LANCL2	Q9NS86	450 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	TUBA8	Q9NY65	449 aa	Predicted RBP	6.28	□□□□□ -1.4
CD44-231	ENST00000531110	FAM30A	Q9NZY2	134 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	PNMA2	Q9UL42	364 aa		6.28	□□□□□ -1.4
CD44-231	ENST00000531110	RPAP1	Q9BWH6	1393 aa	Predicted RBP	6.28	□□□□□ -1.4
CD44-231	ENST00000531110	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	6.27	□□□□□ -1.41
CD44-231	ENST00000531110	ERICH3	Q5RHP9	1530 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110		A0A087WUV0	522 aa	Predicted RBP	6.27	□□□□□ -1.41
CD44-231	ENST00000531110		A0A1B0GUA9	196 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	SGTA	O43765	313 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	KRT38	O76015	456 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	IL2RB	P14784	551 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	HOXD10	P28358	340 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	HIBADH	P31937	336 aa	Known RBP	6.27	□□□□□ -1.41
CD44-231	ENST00000531110	RABGGTB	P53611	331 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	EPHB1	P54762	984 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	RBM6	P78332	1123 aa	Known RBP	6.27	□□□□□ -1.41
CD44-231	ENST00000531110	IQCB1	Q15051	598 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	CLPP	Q16740	277 aa	Predicted RBP	6.27	□□□□□ -1.41
CD44-231	ENST00000531110	KBTBD12	Q3ZCT8	623 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	PRAMEF14	Q5SWL7	426 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	HHAT	Q5VTY9	493 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	MIGA2	Q7L4E1	593 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	UBE2Q1	Q7Z7E8	422 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	LMNTD2	Q8IXW0	634 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	GSPT2	Q8IYD1	628 aa	Known RBP	6.27	□□□□□ -1.41
CD44-231	ENST00000531110	CMTR2	Q8IYT2	770 aa	Known RBP	6.27	□□□□□ -1.41
CD44-231	ENST00000531110	OR52N2	Q8NGI0	321 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	ERMN	Q8TAM6	284 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	HDAC10	Q969S8	669 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	SNX21	Q969T3	373 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	EXOC4	Q96A65	974 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	ZBTB9	Q96C00	473 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	SMAD5	Q99717	465 aa	Known RBP	6.27	□□□□□ -1.41
CD44-231	ENST00000531110	BAG1	Q99933	345 aa	Predicted RBP	6.27	□□□□□ -1.41
CD44-231	ENST00000531110	C7orf25	Q9BPX7	421 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	CSRNP2	Q9H175	543 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	DMRT3	Q9NQL9	472 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	ZNF446	Q9NWS9	450 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	MOCS1	Q9NZB8	636 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	CLIP2	Q9UDT6	1046 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	FBXO9	Q9UK97	447 aa	Predicted RBP	6.27	□□□□□ -1.41
CD44-231	ENST00000531110	MYRF	Q9Y2G1	1151 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	WDR37	Q9Y2I8	494 aa		6.27	□□□□□ -1.41
CD44-231	ENST00000531110	RRP15	Q9Y3B9	282 aa	Known RBP	6.27	□□□□□ -1.41
CD44-231	ENST00000531110	POLR1A	O95602	1720 aa	Predicted RBP	6.26	□□□□□ -1.41
CD44-231	ENST00000531110	TMEM110-MUSTN1	A8MSY1	372 aa		6.26	□□□□□ -1.41

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