RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 NFIL3Q16649 462 aa15.05■□□□□ 0
USP48-213ENST00000529637 EZH1Q92800 747 aaPredicted RBP15.05■□□□□ 0
USP48-213ENST00000529637 CD101Q93033 1021 aa15.05■□□□□ 0
USP48-213ENST00000529637 ZNF653Q96CK0 615 aa15.05■□□□□ 0
USP48-213ENST00000529637 FAM84AQ96KN4 292 aa15.05■□□□□ 0
USP48-213ENST00000529637 PCDHB18PQ96TA0 734 aa15.05■□□□□ 0
USP48-213ENST00000529637 DDX50Q9BQ39 737 aaKnown RBP15.05■□□□□ 0
USP48-213ENST00000529637 USP20Q9Y2K6 914 aa15.05■□□□□ 0
USP48-213ENST00000529637 ASNSP08243 561 aa15.05■□□□□ -0
USP48-213ENST00000529637 HSPA6P17066 643 aa15.05■□□□□ -0
USP48-213ENST00000529637 SOX10P56693 466 aa15.05■□□□□ -0
USP48-213ENST00000529637 TSNAXIP1Q2TAA8 658 aa15.05■□□□□ -0
USP48-213ENST00000529637 SLC47A2Q86VL8 602 aa15.05■□□□□ -0
USP48-213ENST00000529637 TAAR1Q96RJ0 339 aa15.05■□□□□ -0
USP48-213ENST00000529637 TRIM4Q9C037 500 aa15.05■□□□□ -0
USP48-213ENST00000529637 USH1CQ9Y6N9 552 aa15.05■□□□□ -0
USP48-213ENST00000529637 KRT36O76013 467 aa15.05■□□□□ -0
USP48-213ENST00000529637 ASMTLO95671 621 aa15.05■□□□□ -0
USP48-213ENST00000529637 ICAM1P05362 532 aa15.05■□□□□ -0
USP48-213ENST00000529637 ATP5DP30049 168 aa15.05■□□□□ -0
USP48-213ENST00000529637 UGCGQ16739 394 aa15.05■□□□□ -0
USP48-213ENST00000529637 HP1BP3Q5SSJ5 553 aaPredicted RBP15.05■□□□□ -0
USP48-213ENST00000529637 SNX30Q5VWJ9 437 aa15.05■□□□□ -0
USP48-213ENST00000529637 C11orf63Q6NUN7 778 aa15.05■□□□□ -0
USP48-213ENST00000529637 DTX3LQ8TDB6 740 aa15.05■□□□□ -0
USP48-213ENST00000529637 SCG3Q8WXD2 468 aaKnown RBP15.05■□□□□ -0
USP48-213ENST00000529637 BICD1Q96G01 975 aa15.05■□□□□ -0
USP48-213ENST00000529637 TMEM117Q9H0C3 514 aa15.05■□□□□ -0
USP48-213ENST00000529637 TOPORSQ9NS56 1045 aaPredicted RBP15.05■□□□□ -0
USP48-213ENST00000529637 NRXN2Q9P2S2 1712 aa15.05■□□□□ -0
USP48-213ENST00000529637 MAPK13O15264 365 aa15.04■□□□□ -0
USP48-213ENST00000529637 ATP9AO75110 1047 aa15.04■□□□□ -0
USP48-213ENST00000529637 CALCAP01258 141 aa15.04■□□□□ -0
USP48-213ENST00000529637 MUTP22033 750 aa15.04■□□□□ -0
USP48-213ENST00000529637 ERFP50548 548 aa15.04■□□□□ -0
USP48-213ENST00000529637 NOP9Q86U38 636 aaKnown RBP15.04■□□□□ -0
USP48-213ENST00000529637 SLC9A9Q8IVB4 645 aa15.04■□□□□ -0
USP48-213ENST00000529637 DRAXINQ8NBI3 349 aaPredicted RBP15.04■□□□□ -0
USP48-213ENST00000529637 LMO3Q8TAP4 145 aa15.04■□□□□ -0
USP48-213ENST00000529637 LRRC8CQ8TDW0 803 aa15.04■□□□□ -0
USP48-213ENST00000529637 INPP5DQ92835 1189 aa15.04■□□□□ -0
USP48-213ENST00000529637 MRRFQ96E11 262 aaKnown RBP15.04■□□□□ -0
USP48-213ENST00000529637 GORASP1Q9BQQ3 440 aa15.04■□□□□ -0
USP48-213ENST00000529637 NUP85Q9BW27 656 aa15.04■□□□□ -0
USP48-213ENST00000529637 OCEL1Q9H607 264 aa15.04■□□□□ -0
USP48-213ENST00000529637 MTUS1Q9ULD2 1270 aa15.04■□□□□ -0
USP48-213ENST00000529637 STARD13Q9Y3M8 1113 aa15.04■□□□□ -0
USP48-213ENST00000529637 ADGRA3Q8IWK6 1321 aa15.04■□□□□ -0
USP48-213ENST00000529637 COL11A2P13942 1736 aaPredicted RBP15.04■□□□□ -0
USP48-213ENST00000529637 IL9RQ01113 521 aa15.04■□□□□ -0
USP48-213ENST00000529637 EPC2Q52LR7 807 aa15.04■□□□□ -0
USP48-213ENST00000529637 SGO2Q562F6 1265 aa15.04■□□□□ -0
USP48-213ENST00000529637 PLEKHG4Q58EX7 1191 aa15.04■□□□□ -0
USP48-213ENST00000529637 CYP4F22Q6NT55 531 aa15.04■□□□□ -0
USP48-213ENST00000529637 C4orf33Q8N1A6 199 aa15.04■□□□□ -0
USP48-213ENST00000529637 B4GALNT2Q8NHY0 566 aa15.04■□□□□ -0
USP48-213ENST00000529637 PLEKHO2Q8TD55 490 aa15.04■□□□□ -0
USP48-213ENST00000529637 RMDN3Q96TC7 470 aa15.04■□□□□ -0
USP48-213ENST00000529637 FAM47DPA6NHR8 397 aa15.04■□□□□ -0
USP48-213ENST00000529637 ADRB2P07550 413 aa15.04■□□□□ -0
USP48-213ENST00000529637 RFX1P22670 979 aa15.04■□□□□ -0
USP48-213ENST00000529637 RPS6P62753 249 aaKnown RBP15.04■□□□□ -0
USP48-213ENST00000529637 RCN1Q15293 331 aa15.04■□□□□ -0
USP48-213ENST00000529637 SNRNP35Q16560 246 aaKnown RBP15.04■□□□□ -0
USP48-213ENST00000529637 C4orf50Q6ZRC1 276 aa15.04■□□□□ -0
USP48-213ENST00000529637 MTDHQ86UE4 582 aaKnown RBP15.04■□□□□ -0
USP48-213ENST00000529637 ZC3H18Q86VM9 953 aaKnown RBP15.04■□□□□ -0
USP48-213ENST00000529637 ZFAND2BQ8WV99 257 aa15.04■□□□□ -0
USP48-213ENST00000529637 POMGNT1Q8WZA1 660 aa15.04■□□□□ -0
USP48-213ENST00000529637 DHX38Q92620 1227 aaKnown RBP15.04■□□□□ -0
USP48-213ENST00000529637 GRAMD1AQ96CP6 724 aa15.04■□□□□ -0
USP48-213ENST00000529637 AGO4Q9HCK5 861 aaKnown RBP15.04■□□□□ -0
USP48-213ENST00000529637 ABLIM1O14639 778 aa15.03■□□□□ -0
USP48-213ENST00000529637 MRPS9P82933 396 aaKnown RBP15.03■□□□□ -0
USP48-213ENST00000529637 SPDYE2Q495Y8 402 aa15.03■□□□□ -0
USP48-213ENST00000529637 WASHC2DQ5SRD0 308 aa15.03■□□□□ -0
USP48-213ENST00000529637 MCF2L2Q86YR7 1114 aa15.03■□□□□ -0
USP48-213ENST00000529637 ZNF564Q8TBZ8 553 aaPredicted RBP15.03■□□□□ -0
USP48-213ENST00000529637 C10orf82Q8WW14 230 aa15.03■□□□□ -0
USP48-213ENST00000529637 CADM1Q9BY67 442 aaKnown RBP15.03■□□□□ -0
USP48-213ENST00000529637 LRRC19Q9H756 370 aa15.03■□□□□ -0
USP48-213ENST00000529637 WHRNQ9P202 907 aa15.03■□□□□ -0
USP48-213ENST00000529637 SYNPO2Q9UMS6 1093 aa15.03■□□□□ -0
USP48-213ENST00000529637 DENND3A2RUS2 1198 aa15.03■□□□□ -0
USP48-213ENST00000529637 PLSCR1O15162 318 aa15.03■□□□□ -0
USP48-213ENST00000529637 MFAP3P55082 362 aa15.03■□□□□ -0
USP48-213ENST00000529637 RASA3Q14644 834 aa15.03■□□□□ -0
USP48-213ENST00000529637 CMPK2Q5EBM0 449 aa15.03■□□□□ -0
USP48-213ENST00000529637 ACSBG2Q5FVE4 666 aa15.03■□□□□ -0
USP48-213ENST00000529637 ARHGEF16Q5VV41 709 aa15.03■□□□□ -0
USP48-213ENST00000529637 DAB2IPQ5VWQ8 1189 aa15.03■□□□□ -0
USP48-213ENST00000529637 EPS8L1Q8TE68 723 aa15.03■□□□□ -0
USP48-213ENST00000529637 DCLRE1BQ9H816 532 aa15.03■□□□□ -0
USP48-213ENST00000529637 R3HDM2Q9Y2K5 976 aaKnown RBP15.03■□□□□ -0
USP48-213ENST00000529637 CDH16O75309 829 aa15.02■□□□□ -0
USP48-213ENST00000529637 ATP5HO75947 161 aa15.02■□□□□ -0
USP48-213ENST00000529637 RRM1P23921 792 aa15.02■□□□□ -0
USP48-213ENST00000529637 RPA3P35244 121 aaPredicted RBP15.02■□□□□ -0
USP48-213ENST00000529637 SPP2Q13103 211 aa15.02■□□□□ -0
USP48-213ENST00000529637 USP4Q13107 963 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms