RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 NAB2Q15742 525 aa22.51■■□□□ 1.19
VPS28-208ENST00000527797 SCARA5Q6ZMJ2 495 aa22.51■■□□□ 1.19
VPS28-208ENST00000527797 AGMOQ6ZNB7 445 aa22.51■■□□□ 1.19
VPS28-208ENST00000527797 LRRC52Q8N7C0 313 aa22.51■■□□□ 1.19
VPS28-208ENST00000527797 RBBP8NLQ8NC74 664 aaPredicted RBP22.51■■□□□ 1.19
VPS28-208ENST00000527797 ZFP42Q96MM3 310 aa22.51■■□□□ 1.19
VPS28-208ENST00000527797 FTHL17Q9BXU8 183 aa22.51■■□□□ 1.19
VPS28-208ENST00000527797 BCO2Q9BYV7 579 aa22.51■■□□□ 1.19
VPS28-208ENST00000527797 UBN1Q9NPG3 1134 aa22.51■■□□□ 1.19
VPS28-208ENST00000527797 CISHQ9NSE2 258 aa22.51■■□□□ 1.19
VPS28-208ENST00000527797 SLC38A7Q9NVC3 462 aa22.51■■□□□ 1.19
VPS28-208ENST00000527797 RCCD1A6NED2 376 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 PTGESO14684 152 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 WEE2P0C1S8 567 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 CD58P19256 250 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 MLH1P40692 756 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 TLE2Q04725 743 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 TRIM60Q495X7 471 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 C9orf57Q5W0N0 161 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 FAM43BQ6ZT52 329 aaPredicted RBP22.5■■□□□ 1.19
VPS28-208ENST00000527797 RNF169Q8NCN4 708 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 OLIG1Q8TAK6 271 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 GAD1Q99259 594 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 CYP3A43Q9HB55 503 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 ACP6Q9NPH0 428 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 NENFQ9UMX5 172 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 TFR2Q9UP52 801 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.5■■□□□ 1.19
VPS28-208ENST00000527797 RALGAPA2Q2PPJ7 1873 aa22.5■■□□□ 1.19
VPS28-208ENST00000527797 ANO9A1A5B4 782 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 NBNO60934 754 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 TNNC1P63316 161 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 CDR2Q01850 454 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 TAF3Q5VWG9 929 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 ECHDC2Q86YB7 292 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 PPP1R10Q96QC0 940 aaKnown RBP22.49■■□□□ 1.19
VPS28-208ENST00000527797 TMEM106CQ9BVX2 250 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 LACRTQ9GZZ8 138 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 HIPK3Q9H422 1215 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 RSAD1Q9HA92 442 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 GUCA1BQ9UMX6 200 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 CITO14578 2027 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 ARL5CA6NH57 179 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 PIRO00625 290 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 PJA2O43164 708 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 KIF5CO60282 957 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 ABL1P00519 1130 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 CAPN2P17655 700 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 ETF1P62495 437 aaKnown RBP22.49■■□□□ 1.19
VPS28-208ENST00000527797 FAAP100Q0VG06 881 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 SLC24A5Q71RS6 500 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 RTN4RL1Q86UN2 441 aaPredicted RBP22.49■■□□□ 1.19
VPS28-208ENST00000527797 ZNF677Q86XU0 584 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 C11orf49Q9H6J7 331 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 TRIM10Q9UDY6 481 aa22.49■■□□□ 1.19
VPS28-208ENST00000527797 CENPFP49454 3210 aa22.48■■□□□ 1.19
VPS28-208ENST00000527797 THP07101 528 aa22.48■■□□□ 1.19
VPS28-208ENST00000527797 CHRNB2P17787 502 aa22.48■■□□□ 1.19
VPS28-208ENST00000527797 IBSPP21815 317 aaPredicted RBP22.48■■□□□ 1.19
VPS28-208ENST00000527797 PNPLA4P41247 253 aa22.48■■□□□ 1.19
VPS28-208ENST00000527797 GNG11P61952 73 aa22.48■■□□□ 1.19
VPS28-208ENST00000527797 SOX4Q06945 474 aaPredicted RBP22.48■■□□□ 1.19
VPS28-208ENST00000527797 GSTCDQ8NEC7 633 aa22.48■■□□□ 1.19
VPS28-208ENST00000527797 DDX1Q92499 740 aaKnown RBP22.48■■□□□ 1.19
VPS28-208ENST00000527797 ZNF560Q96MR9 790 aa22.48■■□□□ 1.19
VPS28-208ENST00000527797 FAM124BQ9H5Z6 455 aaPredicted RBP22.48■■□□□ 1.19
VPS28-208ENST00000527797 C9IYK1 514 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 PPEF2O14830 753 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 PARNO95453 639 aaKnown RBP22.47■■□□□ 1.19
VPS28-208ENST00000527797 MMEP08473 750 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 LRPAP1P30533 357 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 ZNF132P52740 706 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 FMO1Q01740 532 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 GPNMBQ14956 572 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 ZNF598Q86UK7 904 aaKnown RBP22.47■■□□□ 1.19
VPS28-208ENST00000527797 TTC39CQ8N584 583 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 SEPT8Q92599 483 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 MMS19Q96T76 1030 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 TSPYL2Q9H2G4 693 aaPredicted RBP22.47■■□□□ 1.19
VPS28-208ENST00000527797 SMYD3Q9H7B4 428 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 MYO1AQ9UBC5 1043 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 ATP11BQ9Y2G3 1177 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 ATP8B3O60423 1300 aa22.47■■□□□ 1.19
VPS28-208ENST00000527797 EOMESO95936 686 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 H2AFZP0C0S5 128 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 GNA15P30679 374 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 RAP1GAPP47736 663 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 CDH8P55286 799 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 FAM189BP81408 668 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 PLEKHG4Q58EX7 1191 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 SYT10Q6XYQ8 523 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 H2AFVQ71UI9 128 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 DBF4BQ8NFT6 615 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 ZNF592Q92610 1267 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 APBB2Q92870 758 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 PAWRQ96IZ0 340 aaKnown RBP22.46■■□□□ 1.19
VPS28-208ENST00000527797 SDCBP2Q9H190 292 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 GOLGA2P5Q9HBQ8 144 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 MIOSQ9NXC5 875 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 INTUQ9ULD6 942 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms