RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 LNX2Q8N448 690 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 SLC17A8Q8NDX2 589 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 NSUN7Q8NE18 718 aaKnown RBP3.11□□□□□ -1.91
CD44-216ENST00000525293 SSH3Q8TE77 659 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 TMEM125Q96AQ2 219 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 KLHL32Q96NJ5 620 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 DMRTA2Q96SC8 542 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 PSMD1Q99460 953 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 SMAD5Q99717 465 aaKnown RBP3.11□□□□□ -1.91
CD44-216ENST00000525293 VRK1Q99986 396 aaPredicted RBP3.11□□□□□ -1.91
CD44-216ENST00000525293 ANP32EQ9BTT0 268 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 PACSIN1Q9BY11 444 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 IMPG2Q9BZV3 1241 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 R3HDMLQ9H3Y0 253 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 KIAA1586Q9HCI6 787 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 ALG13Q9NP73 1137 aaKnown RBP3.11□□□□□ -1.91
CD44-216ENST00000525293 KCTD5Q9NXV2 234 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 VSX1Q9NZR4 365 aaPredicted RBP3.11□□□□□ -1.91
CD44-216ENST00000525293 JKAMPQ9P055 326 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 TLK1Q9UKI8 766 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 SLC45A2Q9UMX9 530 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 PRAMEF33A0A0G2JMD5 474 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 MASP2O00187 686 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 MGST3O14880 152 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 PRAMEF10O60809 474 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 RPLP2P05387 115 aaKnown RBP3.1□□□□□ -1.91
CD44-216ENST00000525293 KCNA2P16389 499 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 RARRES1P49788 294 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 ADKP55263 362 aaKnown RBP3.1□□□□□ -1.91
CD44-216ENST00000525293 KRT85P78386 507 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 MRPS35P82673 323 aaKnown RBP3.1□□□□□ -1.91
CD44-216ENST00000525293 DSC2Q02487 901 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 TLE1Q04724 770 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 ZNF844Q08AG5 666 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 CD300EQ496F6 205 aaPredicted RBP3.1□□□□□ -1.91
CD44-216ENST00000525293 KHDC1Q4VXA5 237 aaKnown RBP3.1□□□□□ -1.91
CD44-216ENST00000525293 ZNF362Q5T0B9 420 aaPredicted RBP3.1□□□□□ -1.91
CD44-216ENST00000525293 SP5Q6BEB4 398 aaPredicted RBP3.1□□□□□ -1.91
CD44-216ENST00000525293 ZNF365Q70YC5 407 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 CLNKQ7Z7G1 428 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 TTC7BQ86TV6 843 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 BOLLQ8N9W6 283 aaKnown RBP3.1□□□□□ -1.91
CD44-216ENST00000525293 TMIEQ8NEW7 156 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 SLC30A5Q8TAD4 765 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 ACTRT2Q8TDY3 377 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 NTN5Q8WTR8 489 aaPredicted RBP3.1□□□□□ -1.91
CD44-216ENST00000525293 ZNF764Q96H86 408 aaPredicted RBP3.1□□□□□ -1.91
CD44-216ENST00000525293 DUSP26Q9BV47 211 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 MAN1C1Q9NR34 630 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 FOXJ2Q9P0K8 574 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 CALCOCO1Q9P1Z2 691 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 CTTNBP2NLQ9P2B4 639 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 CFAP20Q9Y6A4 193 aaKnown RBP3.1□□□□□ -1.91
CD44-216ENST00000525293 COX11Q9Y6N1 276 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 SPATA31A6Q5VVP1 1343 aa3.1□□□□□ -1.91
CD44-216ENST00000525293 A0A1W2PS29 197 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 LRRC14BA6NHZ5 514 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 F2RL2O00254 374 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 PPM1GO15355 546 aaPredicted RBP3.09□□□□□ -1.91
CD44-216ENST00000525293 YY2O15391 372 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 PEX1O43933 1283 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 NCLP19338 710 aaKnown RBP3.09□□□□□ -1.91
CD44-216ENST00000525293 MALP21145 153 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 GATA3P23771 443 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 FOLR3P41439 243 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 ELLP55199 621 aaPredicted RBP3.09□□□□□ -1.91
CD44-216ENST00000525293 RPS7P62081 194 aaKnown RBP3.09□□□□□ -1.91
CD44-216ENST00000525293 MRPS21P82921 87 aaKnown RBP3.09□□□□□ -1.91
CD44-216ENST00000525293 SNAPC2Q13487 334 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 DYRK1AQ13627 763 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 CCDC142Q17RM4 750 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 TSHZ1Q6ZSZ6 1077 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 ARHGEF25Q86VW2 580 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 CNPY4Q8N129 248 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 CFAP52Q8N1V2 620 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 MIER2Q8N344 545 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 AOPEPQ8N6M6 819 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 PDPRQ8NCN5 879 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 NSUN6Q8TEA1 469 aaKnown RBP3.09□□□□□ -1.91
CD44-216ENST00000525293 LRIG1Q96JA1 1093 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 LRFN3Q9BTN0 628 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 ASPSCR1Q9BZE9 553 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 SLC13A1Q9BZW2 595 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 PCDH12Q9NPG4 1184 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 INTS13Q9NVM9 706 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 COL4A3BPQ9Y5P4 624 aa3.09□□□□□ -1.91
CD44-216ENST00000525293 ARID4BQ4LE39 1312 aaPredicted RBP3.09□□□□□ -1.91
CD44-216ENST00000525293 PCSK5Q92824 1860 aa3.09□□□□□ -1.92
CD44-216ENST00000525293 CCDC195A0A1B0GUA6 201 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 TOR1BO14657 336 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 SUN1O94901 812 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 ZRANB2O95218 330 aaKnown RBP eCLIP3.08□□□□□ -1.92
CD44-216ENST00000525293 IGLV2-14P01704 120 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 SRGNP10124 158 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 FBLP22087 321 aaKnown RBP3.08□□□□□ -1.92
CD44-216ENST00000525293 SMARCA1P28370 1054 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 CD38P28907 300 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 CACNA2D1P54289 1103 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 C21orf58P58505 322 aa3.08□□□□□ -1.92
CD44-216ENST00000525293 PSMC1P62191 440 aaKnown RBP3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms