RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 ITGA8P53708 1063 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 GRM4Q14833 912 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 SLC10A5Q5PT55 438 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 CATSPER4Q7RTX7 472 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 SLC30A5Q8TAD4 765 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 CLMNQ96JQ2 1002 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 KLHL25Q9H0H3 589 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 DCLRE1BQ9H816 532 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 MRGBPQ9NV56 204 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 HSPBP1Q9NZL4 362 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 IL1RAPL1Q9NZN1 696 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 APEX2Q9UBZ4 518 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 CEP152O94986 1710 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 LZTS3O60299 673 aaPredicted RBP13.93□□□□□ -0.18
TCOF1-214ENST00000515035 GYS1P13807 737 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 KLRC1P26715 233 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 GUCY1A2P33402 732 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 GNL1P36915 607 aaPredicted RBP13.93□□□□□ -0.18
TCOF1-214ENST00000515035 NLRP11P59045 1033 aaKnown RBP13.93□□□□□ -0.18
TCOF1-214ENST00000515035 GPR141Q7Z602 305 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 HORMAD1Q86X24 394 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 ZNF786Q8N393 782 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 CNDP1Q96KN2 507 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 TRIM45Q9H8W5 580 aaPredicted RBP13.93□□□□□ -0.18
TCOF1-214ENST00000515035 CPDO75976 1380 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 NFKBIAP25963 317 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 OTULINQ96BN8 352 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 BBS2Q9BXC9 721 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 TBC1D22BQ9NU19 505 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 MYO1GB0I1T2 1018 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 EFCAB14O75071 495 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 RHOBTB3O94955 611 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 CEP78Q5JTW2 689 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 KIAA1841Q6NSI8 718 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 STOX1Q6ZVD7 989 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 TSR3Q9UJK0 312 aaKnown RBP13.93□□□□□ -0.18
TCOF1-214ENST00000515035 CDYLQ9Y232 598 aa13.93□□□□□ -0.18
TCOF1-214ENST00000515035 MROH7-TTC4A0A0A0MT08 1334 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 DLC1Q96QB1 1528 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 SPAG6O75602 509 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 P4HBP07237 508 aaKnown RBP13.92□□□□□ -0.18
TCOF1-214ENST00000515035 USP11P51784 963 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 ALX1Q15699 326 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 NLRP9Q7RTR0 991 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 OTUB1Q96FW1 271 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-214ENST00000515035 CEP95Q96GE4 821 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 SERPINB12Q96P63 405 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 CRAMP1Q96RY5 1269 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 WRNIP1Q96S55 665 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 SH3GL1Q99961 368 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 PABPC3Q9H361 631 aaKnown RBP13.92□□□□□ -0.18
TCOF1-214ENST00000515035 KDM4CQ9H3R0 1056 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 PHTF1Q9UMS5 762 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 CDY2AQ9Y6F7 541 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 CDY1Q9Y6F8 540 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 HUS1O60921 280 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 SKAP2O75563 359 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-214ENST00000515035 ALBP02768 609 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 QARSP47897 775 aaKnown RBP13.92□□□□□ -0.18
TCOF1-214ENST00000515035 OVGP1Q12889 678 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 KRT33BQ14525 404 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 ADRM1Q16186 407 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 HDDC2Q7Z4H3 204 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 SUGP1Q8IWZ8 645 aaKnown RBP13.92□□□□□ -0.18
TCOF1-214ENST00000515035 SIKE1Q9BRV8 207 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 TMEM117Q9H0C3 514 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 TASP1Q9H6P5 420 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 H3BQF6 201 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 SLC16A3O15427 465 aaKnown RBP13.92□□□□□ -0.18
TCOF1-214ENST00000515035 GPSM2P81274 684 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 STK4Q13043 487 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 P3H2Q8IVL5 708 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 CASKIN2Q8WXE0 1202 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 CASP10Q92851 521 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 KCNB2Q92953 911 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 ARHGEF26Q96DR7 871 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 ZFYVE19Q96K21 471 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 SHCBP1LQ9BZQ2 653 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 TOPORSQ9NS56 1045 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-214ENST00000515035 TMEM161AQ9NX61 479 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 HEY2Q9UBP5 337 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 LRFN2Q9ULH4 789 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 TFR2Q9UP52 801 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 PTPRUQ92729 1446 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 USP17L10C9JJH3 530 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 PDHBP11177 359 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 CACNB3P54284 484 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 TNFAIP2Q03169 654 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 USP10Q14694 798 aaKnown RBP13.92□□□□□ -0.18
TCOF1-214ENST00000515035 CHI3L2Q15782 390 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 NMD3Q96D46 503 aaKnown RBP13.92□□□□□ -0.18
TCOF1-214ENST00000515035 RBAKQ9NYW8 714 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-214ENST00000515035 GRID1Q9ULK0 1009 aa13.92□□□□□ -0.18
TCOF1-214ENST00000515035 NBPF26B4DH59 902 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 KRT16P08779 473 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 MYL2P10916 166 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 COMTP21964 271 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 KRT76Q01546 638 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 EXOSC10Q01780 885 aaKnown RBP13.91□□□□□ -0.18
TCOF1-214ENST00000515035 NME3Q13232 169 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms