RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 PREPLQ4J6C6 727 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 XKR3Q5GH77 459 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 FAM102AQ5T9C2 384 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 GADL1Q6ZQY3 521 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 TEX9Q8N6V9 391 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 C1orf131Q8NDD1 294 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 MED10Q9BTT4 135 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 NUF2Q9BZD4 464 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 WWP1Q9H0M0 922 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 MANSC1Q9H8J5 431 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 FRMPD4Q14CM0 1322 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 ATXN2Q99700 1313 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 CHD2O14647 1828 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 CST8O60676 142 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 PROSCO94903 275 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 SPATA31C1P0DKV0 1188 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 NPTX2P47972 431 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 DRG2P55039 364 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 TPD52P55327 224 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 IFRD2Q12894 506 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 PPP2R5CQ13362 524 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 CNGA2Q16280 664 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 TKFCQ3LXA3 575 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 MDH1BQ5I0G3 518 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 SV2AQ7L0J3 742 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 NLRP9Q7RTR0 991 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 RASGEF1CQ8N431 466 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 KAT5Q92993 513 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 ELMO3Q96BJ8 720 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 ZNF668Q96K58 619 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 CENPKQ9BS16 269 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 MOV10L1Q9BXT6 1211 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 MRPL4Q9BYD3 311 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 DCLK3Q9C098 648 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 OPLAHO14841 1288 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 CFLARO15519 480 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 SNX3O60493 162 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 NR3C2P08235 984 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 GYS1P13807 737 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 CIITAP33076 1130 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 ZNF200P98182 395 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 PTK7Q13308 1070 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 DBN1Q16643 649 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 HSP90AA5PQ58FG0 334 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 ZFPM1Q8IX07 1006 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 KAT2BQ92831 832 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 TAAR1Q96RJ0 339 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 LRRC4BQ9NT99 713 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 NINJ2Q9NZG7 142 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 PCYOX1Q9UHG3 505 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 TISP43B9A030 160 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 POLD1P28340 1107 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 GTF2H1P32780 548 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 DLG4P78352 724 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 PPP3CAQ08209 521 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 CUL2Q13617 745 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 SMTNL2Q2TAL5 461 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 RTKN2Q8IZC4 609 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 PSPC1Q8WXF1 523 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 ALG3Q92685 438 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 CHST7Q9NS84 486 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 MTO1Q9Y2Z2 717 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 CSADQ9Y600 493 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 GRIN2DO15399 1336 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 IGSF9BQ9UPX0 1349 aa8.86□□□□□ -0.99
LIMCH1-216ENST00000512820 M0R2N6 131 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 ALDH5A1P51649 535 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 COG7P83436 770 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 MMEL1Q495T6 779 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 EAPPQ56P03 285 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 TMEM154Q6P9G4 183 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 LRRC57Q8N9N7 239 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 TMC2Q8TDI7 906 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 FAM151AQ8WW52 585 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 NSL1Q96IY1 281 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 RPAP3Q9H6T3 665 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 ACP6Q9NPH0 428 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 ZNF70Q9UC06 446 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 WDR46O15213 610 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 TGFB1I1O43294 461 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 PPP1R11O60927 126 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 HSPA4LO95757 839 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 IRX1P78414 480 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 SH2D4BQ5SQS7 431 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 GPAT2Q6NUI2 795 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 RGS9BPQ6ZS82 235 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 PPIL6Q8IXY8 311 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 MCOLN2Q8IZK6 566 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 ETNPPLQ8TBG4 499 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 ACAP3Q96P50 834 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 APOL6Q9BWW8 343 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 RAB6BQ9NRW1 208 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 CTNNAL1Q9UBT7 734 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 MARCOQ9UEW3 520 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 TLK1Q9UKI8 766 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 DCDC2CA8MYV0 355 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 GPC4O75487 556 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 SLURP2P0DP57 97 aa8.85□□□□□ -0.99
LIMCH1-216ENST00000512820 SDC4P31431 198 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms