RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 EHD1Q9H4M9 534 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 ARMT1Q9H993 441 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 S100A14Q9HCY8 104 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 NINJ2Q9NZG7 142 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 TTC7AQ9ULT0 858 aaPredicted RBP12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 ECM29Q5VYK3 1845 aa12.7□□□□□ -0.38
LIMCH1-213ENST00000511496 A6NL46 340 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 KDM1AO60341 852 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 ZBTB11O95625 1053 aaPredicted RBP12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 RBP3P10745 1247 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 RASA2Q15283 850 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 PKN2Q16513 984 aaKnown RBP12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 ELMSAN1Q6PJG2 1045 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 RNF111Q6ZNA4 994 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 ERI1Q8IV48 349 aaKnown RBP12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 C4orf32Q8N8J7 132 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 C7orf43Q8WVR3 580 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 ZNF496Q96IT1 587 aaPredicted RBP12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 ANKRD36BP1Q96IX9 119 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 ZFRQ96KR1 1074 aaKnown RBP12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 BHMT2Q9H2M3 363 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 GPR108Q9NPR9 543 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 ANLNQ9NQW6 1124 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 CHORDC1Q9UHD1 332 aaPredicted RBP12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 CEPT1Q9Y6K0 416 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 PCDH11YQ9BZA8 1340 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 MGEA5O60502 916 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 RASGRF1Q13972 1273 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 ARSHQ5FYA8 562 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 TTC30AQ86WT1 665 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 THEMISQ8N1K5 641 aaPredicted RBP12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 NMUR2Q9GZQ4 415 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 SIAEQ9HAT2 523 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 EPB41L4AQ9HCS5 686 aaPredicted RBP12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 SACM1LQ9NTJ5 587 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 ZDHHC7Q9NXF8 308 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 TNKSO95271 1327 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 EXOC1LA0A1B0GW35 172 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 A8MU76 341 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 FAM47E-STBD1D6RA91 191 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 MUTP22033 750 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 COILP38432 576 aaPredicted RBP12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 NR1D2Q14995 579 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 C1orf54Q8WWF1 131 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 MRPS26Q9BYN8 205 aaKnown RBP12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 MOSPD1Q9UJG1 213 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 RABGAP1Q9Y3P9 1069 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 PCDHA3Q9Y5H8 950 aa12.69□□□□□ -0.38
LIMCH1-213ENST00000511496 FKBP6O75344 327 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 SRGAP2CP0DJJ0 459 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 SRGAP2BP0DMP2 458 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 PPARGP37231 505 aaPredicted RBP12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 PSMD6Q15008 389 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 EFTUD2Q15029 972 aaKnown RBP eCLIP12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 ARL13BQ3SXY8 428 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 SPDYAQ5MJ70 313 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 EGFLAMQ63HQ2 1017 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 ALYREFQ86V81 257 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 ANKLE2Q86XL3 938 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 SPATA5Q8NB90 893 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 SLC7A5P2Q9GIP4 190 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 PARVBQ9HBI1 364 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 SLC38A7Q9NVC3 462 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 MRC2Q9UBG0 1479 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 ABCB11O95342 1321 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 CCDC194A0A1B0GVG4 234 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 MEI4A8MW99 385 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 ITM2AO43736 263 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 MAGEC1O60732 1142 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 TM7SF2O76062 418 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 ADRA1DP25100 572 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 PHKA2P46019 1235 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 TRAPPC10P48553 1259 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 YWHAGP61981 247 aaKnown RBP eCLIP12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 PSMC1P62191 440 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 SF3B4Q15427 424 aaKnown RBP eCLIP12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 GLYCTKQ8IVS8 523 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 NGDNQ8NEJ9 315 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 ACTRT2Q8TDY3 377 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 NACC2Q96BF6 587 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 STRBPQ96SI9 672 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 C7orf25Q9BPX7 421 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 HGH1Q9BTY7 390 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 PPARGC1AQ9UBK2 798 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 PCDHA4Q9UN74 947 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 DTNAQ9Y4J8 743 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 A2ML1A8K2U0 1454 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 MLH3Q9UHC1 1453 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 IGSF9BQ9UPX0 1349 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 PLSCR1O15162 318 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 THRAP10827 490 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 MYL2P10916 166 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 KCNA2P16389 499 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 FDFT1P37268 417 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 ITGA8P53708 1063 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 C21orf59P57076 290 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 FKBP3Q00688 224 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 KRT17Q04695 432 aa12.68□□□□□ -0.38
LIMCH1-213ENST00000511496 C1orf141Q5JVX7 400 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms