RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 WDR36Q8NI36 951 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 RNF25Q96BH1 459 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 BDH2Q9BUT1 245 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 SAR1AQ9NR31 198 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 ZBTB1Q9Y2K1 713 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 HEY1Q9Y5J3 304 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 UBXN8O00124 270 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 ZNF23P17027 643 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 MAGEA4P43358 317 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 JAK3P52333 1124 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 MTTPP55157 894 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 ITGA9Q13797 1035 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 ZNF618Q5T7W0 954 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 C1orf228Q6PIY5 440 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 AMER2Q8N7J2 671 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 C7orf31Q8N865 590 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 SYN2Q92777 582 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 NAT9Q9BTE0 207 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 RMND5AQ9H871 391 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 NMRK1Q9NWW6 199 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 CCDC162PA2VCL2 907 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 MEI4A8MW99 385 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 H3BMM5 538 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 SLC16A3O15427 465 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 ECDO95905 644 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 FASP25445 335 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 MAPK1P28482 360 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 PRKAA2P54646 552 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 GEMIN4P57678 1058 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 CCZ1BP86790 482 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 CCZ1P86791 482 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 ZNF554Q86TJ5 538 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 SCFD2Q8WU76 684 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 FKBP14Q9NWM8 211 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 PHTF1Q9UMS5 762 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 INPP5FQ9Y2H2 1132 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 THRAP3Q9Y2W1 955 aaKnown RBP11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 SH3GLB1Q9Y371 365 aa11.73□□□□□ -0.53
LIMCH1-208ENST00000508501 TNFRSF21O75509 655 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 CAPZA2P47755 286 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 RGS4P49798 205 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 SEC24CP53992 1094 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 IDI1Q13907 227 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 NAA30Q147X3 362 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 CYP4Z1Q86W10 505 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 HES6Q96HZ4 224 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 FAM167AQ96KS9 214 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 C17orf80Q9BSJ5 609 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 CORO1CQ9ULV4 474 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 WDR7Q9Y4E6 1490 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 NEURL1BA8MQ27 555 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 POTECB2RU33 542 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 K7ERI5 159 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 WEE2P0C1S8 567 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 IL12AP29459 219 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 EIF3EP60228 445 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 RPS6P62753 249 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 SCRN3Q0VDG4 424 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 PTK6Q13882 451 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 DRAP1Q14919 205 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 KNOP1Q1ED39 458 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 CERKLQ49MI3 558 aaPredicted RBP11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 MEI1Q5TIA1 1274 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 JAMLQ86YT9 394 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 LRRC34Q8IZ02 419 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 OR6P1Q8NGX9 317 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 PI4K2BQ8TCG2 481 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 FAM20AQ96MK3 541 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 MSTO1Q9BUK6 570 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 CHID1Q9BWS9 393 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 FUT8Q9BYC5 575 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 WBP11Q9Y2W2 641 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 SNX30Q5VWJ9 437 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 TRAPPC11Q7Z392 1133 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 IFNEQ86WN2 208 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 ATXN2LQ8WWM7 1075 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 NARS2Q96I59 477 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 REXO4Q9GZR2 422 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 ATP6V1HQ9UI12 483 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 MAP3K19Q56UN5 1328 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 MROH7Q68CQ1 1323 aa11.72□□□□□ -0.53
LIMCH1-208ENST00000508501 POLR2EP19388 210 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 TKTP29401 623 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 NUDT2P50583 147 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 GRAMD1CQ8IYS0 662 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 EEF2KMTQ96G04 330 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 NCKAP5LQ9HCH0 1330 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 USP27XA6NNY8 438 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 TM9SF1O15321 606 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 P4HA2O15460 535 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 KLHL18O94889 574 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 HSD17B4P51659 736 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 AKR1D1P51857 326 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 NR1H2P55055 460 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 TRAP1Q12931 704 aaKnown RBP11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 LRRC6Q86X45 466 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 STK32AQ8WU08 396 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 C9orf16Q9BUW7 83 aa11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 TOPORSQ9NS56 1045 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-208ENST00000508501 EMC3Q9P0I2 261 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms