RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 LRRC27Q9C0I9 530 aa4.3□□□□□ -1.72
LSM6-205ENST00000507449 BRD9Q9H8M2 597 aa4.3□□□□□ -1.72
LSM6-205ENST00000507449 GPR35Q9HC97 309 aa4.3□□□□□ -1.72
LSM6-205ENST00000507449 SPON1Q9HCB6 807 aa4.3□□□□□ -1.72
LSM6-205ENST00000507449 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.3□□□□□ -1.72
LSM6-205ENST00000507449 RLIMQ9NVW2 624 aa4.3□□□□□ -1.72
LSM6-205ENST00000507449 PIH1D1Q9NWS0 290 aaKnown RBP4.3□□□□□ -1.72
LSM6-205ENST00000507449 AGAP1Q9UPQ3 857 aa4.3□□□□□ -1.72
LSM6-205ENST00000507449 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.3□□□□□ -1.72
LSM6-205ENST00000507449 ZNF785A8K8V0 405 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 ISM1B1AKI9 464 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 RASA4BC9J798 803 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 OVOL3O00110 214 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 LEFTY2O00292 366 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 RASA4O43374 803 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 AGFG2O95081 481 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 LDHAP00338 332 aaKnown RBP4.29□□□□□ -1.72
LSM6-205ENST00000507449 ITGB3P05106 788 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 ITGB1P05556 798 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 ALAS1P13196 640 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 BRAFP15056 766 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 TSHRP16473 764 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 CHN2P52757 468 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 PSMC1P62191 440 aaKnown RBP4.29□□□□□ -1.72
LSM6-205ENST00000507449 DCAF17Q5H9S7 520 aaPredicted RBP4.29□□□□□ -1.72
LSM6-205ENST00000507449 CRB2Q5IJ48 1285 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 NOMO2Q5JPE7 1267 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 METTL24Q5JXM2 366 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 NAIF1Q69YI7 327 aaPredicted RBP4.29□□□□□ -1.72
LSM6-205ENST00000507449 EFCAB12Q6NXP0 572 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 Q6ZRM9 215 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 TOGARAM2Q6ZUX3 1019 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 MED25Q71SY5 747 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 SKAP1Q86WV1 359 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 MICU3Q86XE3 530 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 PDSS2Q86YH6 399 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 RNF152Q8N8N0 203 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 ZFP28Q8NHY6 868 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 ATXN2LQ8WWM7 1075 aaKnown RBP4.29□□□□□ -1.72
LSM6-205ENST00000507449 MIEF2Q96C03 454 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 SGCZQ96LD1 299 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 TEPSINQ96N21 525 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 TLR10Q9BXR5 811 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 KIAA1586Q9HCI6 787 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 CD248Q9HCU0 757 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 CNNM1Q9NRU3 951 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 GNL3LQ9NVN8 582 aaKnown RBP4.29□□□□□ -1.72
LSM6-205ENST00000507449 COL20A1Q9P218 1284 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 HDAC5Q9UQL6 1122 aa4.29□□□□□ -1.72
LSM6-205ENST00000507449 RHPN2P1A8MT19 583 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 CAPN14A8MX76 684 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 GRXCR1A8MXD5 290 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 TPD52L2O43399 206 aaKnown RBP4.28□□□□□ -1.72
LSM6-205ENST00000507449 NCK2O43639 380 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 IPO13O94829 963 aaKnown RBP4.28□□□□□ -1.72
LSM6-205ENST00000507449 GNAI3P08754 354 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 ZKSCAN1P17029 563 aaPredicted RBP4.28□□□□□ -1.72
LSM6-205ENST00000507449 COMTP21964 271 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 SCNN1GP51170 649 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 ZNF135P52742 658 aaPredicted RBP4.28□□□□□ -1.72
LSM6-205ENST00000507449 GNAI1P63096 354 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 HTRA4P83105 476 aaPredicted RBP4.28□□□□□ -1.72
LSM6-205ENST00000507449 IFIT5Q13325 482 aaKnown RBP4.28□□□□□ -1.72
LSM6-205ENST00000507449 MORC3Q14149 939 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 C3orf38Q5JPI3 329 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 FAM102AQ5T9C2 384 aaPredicted RBP4.28□□□□□ -1.72
LSM6-205ENST00000507449 GLB1LQ6UWU2 654 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 OR2C3Q8N628 320 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 FITM2Q8N6M3 262 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 PCSK9Q8NBP7 692 aaKnown RBP4.28□□□□□ -1.72
LSM6-205ENST00000507449 TBC1D15Q8TC07 691 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 PGBD4Q96DM1 585 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 MSLNLQ96KJ4 702 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 RIPOR3Q96MK2 946 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 MYD88Q99836 296 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 ARPC5LQ9BPX5 153 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 TINAGL1Q9GZM7 467 aaPredicted RBP4.28□□□□□ -1.72
LSM6-205ENST00000507449 ZNF287Q9HBT7 754 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 NLRC4Q9NPP4 1024 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 CFAP97Q9P2B7 532 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 OGDHLQ9ULD0 1010 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 DAAM1Q9Y4D1 1078 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 COMMD10Q9Y6G5 202 aa4.28□□□□□ -1.72
LSM6-205ENST00000507449 TRIM43BA6NCK2 446 aa4.27□□□□□ -1.73
LSM6-205ENST00000507449 TMEM233B4DJY2 109 aa4.27□□□□□ -1.73
LSM6-205ENST00000507449 BTN3A1O00481 513 aa4.27□□□□□ -1.73
LSM6-205ENST00000507449 MFAP3LO75121 409 aa4.27□□□□□ -1.73
LSM6-205ENST00000507449 ZNF623O75123 536 aa4.27□□□□□ -1.73
LSM6-205ENST00000507449 UNC5CO95185 931 aa4.27□□□□□ -1.73
LSM6-205ENST00000507449 ANXA1P04083 346 aa4.27□□□□□ -1.73
LSM6-205ENST00000507449 FCER1AP12319 257 aa4.27□□□□□ -1.73
LSM6-205ENST00000507449 ACO1P21399 889 aaKnown RBP4.27□□□□□ -1.73
LSM6-205ENST00000507449 GCSHP23434 173 aa4.27□□□□□ -1.73
LSM6-205ENST00000507449 APOBEC3AP31941 199 aaPredicted RBP4.27□□□□□ -1.73
LSM6-205ENST00000507449 KCNJ5P48544 419 aa4.27□□□□□ -1.73
LSM6-205ENST00000507449 TOB1P50616 345 aaPredicted RBP4.27□□□□□ -1.73
LSM6-205ENST00000507449 NHLH2Q02577 135 aa4.27□□□□□ -1.73
LSM6-205ENST00000507449 TCF15Q12870 199 aa4.27□□□□□ -1.73
LSM6-205ENST00000507449 CTBP1Q13363 440 aa4.27□□□□□ -1.73
LSM6-205ENST00000507449 C10orf62Q5T681 223 aaPredicted RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms