RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 ZFP37Q9Y6Q3 630 aaPredicted RBP19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 TTC26A0AVF1 554 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 LACTBL1A8MY62 500 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 PRRG1O14668 218 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 LRG1P02750 347 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 CFHP08603 1231 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 PRR29P0C7W0 189 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 RFX1P22670 979 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 NUBP1P53384 320 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 GTF2BQ00403 316 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 CTXN3Q4LDR2 81 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 ZNF280DQ6N043 979 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 SV2BQ7L1I2 683 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 SIX5Q8N196 739 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 CDH7Q9ULB5 785 aa19.53■□□□□ 0.72
SQSTM1-209ENST00000504627 PIEZO1Q92508 2521 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 A0A0B4J269 797 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 WDR27A2RRH5 827 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 STK25O00506 426 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 CYP3A5P20815 502 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 AFMP43652 599 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 MRE11P49959 708 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 TCF15Q12870 199 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 DPYDQ12882 1025 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 PABPC1LQ4VXU2 614 aaKnown RBP19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 ZC2HC1CQ53FD0 456 aaPredicted RBP19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 ZBTB41Q5SVQ8 909 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 SASS6Q6UVJ0 657 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 MAP4K3Q8IVH8 894 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 GRAMD1CQ8IYS0 662 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 TMEM105Q8N8V8 129 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 TRIML1Q8N9V2 468 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 ST13P5Q8NFI4 369 aaPredicted RBP19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 SPATA20Q8TB22 786 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 DDX12PQ92771 950 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 SMARCE1Q969G3 411 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 FIZ1Q96SL8 496 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 IRF2BPLQ9H1B7 796 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 CYP4F11Q9HBI6 524 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 FBXL5Q9UKA1 691 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 NUMBLQ9Y6R0 609 aa19.52■□□□□ 0.72
SQSTM1-209ENST00000504627 POU2F2P09086 479 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 SRFP11831 508 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 ATF2P15336 505 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 LRPAP1P30533 357 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 CLCN5P51795 746 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 TYRO3Q06418 890 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 MRPL58Q14197 206 aaKnown RBP19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 ENOX2Q16206 610 aaKnown RBP19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 STX1AQ16623 288 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 SLFN12LQ6IEE8 588 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 CNNM4Q6P4Q7 775 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 DSTYKQ6XUX3 929 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 SFR1Q86XK3 245 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 CD302Q8IX05 232 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 FGF13Q92913 245 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 TSPAN18Q96SJ8 248 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 HCFC1R1Q9NWW0 138 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 DNMT3BQ9UBC3 853 aaKnown RBP19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 WNT16Q9UBV4 365 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 PCDHB8Q9UN66 801 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 PCDHA5Q9Y5H7 936 aa19.51■□□□□ 0.71
SQSTM1-209ENST00000504627 KMT2EQ8IZD2 1858 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 ANHXE9PGG2 379 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 GALR2O43603 387 aaPredicted RBP19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 ABLIM3O94929 683 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 CPB1P15086 417 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 HTR4Q13639 388 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 ZBTB6Q15916 424 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 TPGS2Q68CL5 300 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 SLC39A4Q6P5W5 647 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 MTSS1LQ765P7 747 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 USP37Q86T82 979 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 TMEM130Q8N3G9 435 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 BEST2Q8NFU1 509 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 ITFG1Q8TB96 612 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 ATOH1Q92858 354 aaPredicted RBP19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 GSDMAQ96QA5 445 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 C7orf25Q9BPX7 421 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 TRIM9Q9C026 710 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 TSPY26PQ9H489 355 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 ST6GALNAC4Q9H4F1 302 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 MRPL44Q9H9J2 332 aaKnown RBP19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 CPSF3Q9UKF6 684 aaKnown RBP19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 CA14Q9ULX7 337 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 MRPS23Q9Y3D9 190 aaKnown RBP19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 DOCK8Q8NF50 2099 aa19.5■□□□□ 0.71
SQSTM1-209ENST00000504627 MYMKA6NI61 221 aa19.49■□□□□ 0.71
SQSTM1-209ENST00000504627 ANKRD63C9JTQ0 380 aa19.49■□□□□ 0.71
SQSTM1-209ENST00000504627 H0Y858 1186 aa19.49■□□□□ 0.71
SQSTM1-209ENST00000504627 FAM189A1O60320 539 aa19.49■□□□□ 0.71
SQSTM1-209ENST00000504627 TBC1D4O60343 1298 aa19.49■□□□□ 0.71
SQSTM1-209ENST00000504627 IDEP14735 1019 aa19.49■□□□□ 0.71
SQSTM1-209ENST00000504627 PTPN2P17706 415 aa19.49■□□□□ 0.71
SQSTM1-209ENST00000504627 ACOT2P49753 483 aa19.49■□□□□ 0.71
SQSTM1-209ENST00000504627 GUCY2FP51841 1108 aa19.49■□□□□ 0.71
SQSTM1-209ENST00000504627 YWHAHQ04917 246 aaPredicted RBP19.49■□□□□ 0.71
SQSTM1-209ENST00000504627 JADE1Q6IE81 842 aa19.49■□□□□ 0.71
SQSTM1-209ENST00000504627 PARM1Q6UWI2 310 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms